Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 141 8e-29 >seq1 Length=5579133 Score = 141 bits (156), Expect = 8e-29 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || | ||||| | || |||||||| ||| Sbjct 3969009 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACTATCACCCTTGAGGTGGAGTCCTCT 3969068 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| |||||| ||||| ||||| ||||| ||||||| Sbjct 3969069 GACACTATTGA--CAATGTCAAGAGCAAAATCCAAGACAAGGAAGGAATTCCTCCTGACC 3969126 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || |||| || || || || |||||||| |||| || ||| | || |||| Sbjct 3969127 AACAACGTCTTATCTTCGCTGGAAAGCAATTAGAGGATGGCCGTACTCTTTCTGACTACA 3969186 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | |||||||| || || || || |||||||| || Sbjct 3969187 ACATTCAAAAGGAGTCTACCCTTCATTTAGTTCT 3969220 Score = 138 bits (152), Expect = 1e-27 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| |||||| | || || | || ||||| || ||| Sbjct 2794724 ATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGGAATCCTCT 2794665 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || || ||||| ||||| ||||| ||||| | Sbjct 2794664 GACACTATTGA--CAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTCCTGATC 2794607 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | ||||||||||| || || || || |||| ||| ||| | ||||||| Sbjct 2794606 AACAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGATTACA 2794547 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| |||||||| ||||| || || || || || Sbjct 2794546 ATATCCAAAAAGAGTCCACTCTTCACTTGGTTCT 2794513 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || || | || ||||| | || || | || |||||||| || Sbjct 3108881 AATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAGTCCTC 3108822 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||| || | ||| |||||| ||||||||||| ||||| ||||| || Sbjct 3108821 TGACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCTGATCA 3108762 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || ||||||| || || || || |||||||||| || ||| || |||||||| Sbjct 3108761 ACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGATTACAA 3108702 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || ||||| || ||||| || || Sbjct 3108701 CATCCAAAAGGAGTCCACTCTTCA 3108678 Score = 100 bits (110), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || |||||||| || | || ||||| |||| || | || || || || Sbjct 3238365 ACGATGCAGATCTTTGTAAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCC 3238306 Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||||||||| || || || ||| |||||| || || ||||| ||||| |||| Sbjct 3238305 TCTGACACTATTGA--CAATGTCAAGAGCAAAATCCAAGATAAGGAAGGAATTCCTCCTG 3238248 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | || ||||| ||||| ||| | || || | || ||| || |||| Sbjct 3238247 ATCAACAACGTTTGATCTTTGCTGGCAAGCAACTCGAGGACGGACGTACTTTGTCTGATT 3238188 Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201 | || || ||||| || ||||| || || Sbjct 3238187 ATAACATCCAAAAGGAGTCCACTCTTCA 3238160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327978875260