Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq2 297 2e-75
>seq2
Length=4539804
Score = 297 bits (328), Expect = 2e-75
Identities = 619/913 (68%), Gaps = 23/913 (3%)
Strand=Plus/Minus
Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849
|||||| ||| ||||||| || |||||| ||||||||||||||||| |||||| |
Sbjct 3722870 CATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCTGC 3722811
Query 92850 CAAAGATATCGAATTCACTAGTGATT-----GGATTCTTGGCGTTATAATACTTTTCACC 92904
||||| || |||| | | | | ||||| | ||||||| ||||| |||
Sbjct 3722810 TAAAGAGAT---ATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATT 3722754
Query 92905 GATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACA 92964
| ||| | ||| || | |||||| |||||||| || |||||| ||||||||||
Sbjct 3722753 GCCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTT 3722694
Query 92965 ATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024
|||||| || || |||| || || |||||||| || ||| | |||||||| || ||||
Sbjct 3722693 ATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAAC 3722634
Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTTGG--TGGTTTTTGTACGACATAATTG 93082
||||| | || || || || | || |||| | || | || | |
Sbjct 3722633 AGCTTCAACAATAATGGCTTCAACA--ACCTTGCGGCCTGGTCTGTGCTTCAAATGACTA 3722576
Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142
|||| || || ||||||||||| || | ||| || || || | ||||| ||||||
Sbjct 3722575 AACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAA 3722516
Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202
|| || | ||| || | ||||| |||||||| |||||||| || || ||||| |||
Sbjct 3722515 AAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCA 3722456
Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262
||||| || |||||||| || || ||||| || || | ||| ||| | | ||||
Sbjct 3722455 GAAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGT---GGAA 3722399
Query 93263 T-TACTGC--TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319
| | | | | ||||| | |||||| | |||||| ||||||| || | ||||
Sbjct 3722398 TCTTCATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTT 3722339
Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379
||||| | || | | | || | | || || ||||||||||| | ||
Sbjct 3722338 AAAATAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCAAA 3722279
Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439
|| || || | ||||| || | ||| || || ||||||||| || || | ||| | |
Sbjct 3722278 AGTGAGTAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGA 3722219
Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAA-AATCTCTCTACGAGATTTTCATTGACTATACC 93498
||||| | |||||| ||||| ||| || | ||| | ||||| ||||| || |||||
Sbjct 3722218 GCTTCAGGGATCTGAACTTCA-GAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACC 3722160
Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558
||| || || || ||| | || | || | ||||| | |||||| | || |
Sbjct 3722159 ATCTGACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAA 3722100
Query 93559 CTT---ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615
||| ||||||||| | ||||| |||||||| | ||| || |||||||||| ||
Sbjct 3722099 CTTGTTATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGA 3722040
Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675
|||||| || || ||||| | | ||| || || ||||| | ||||||||| | |||||
Sbjct 3722039 TGCTTCAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980
Query 93676 ACGATTAGGGTTA 93688
|| | ||| |||
Sbjct 3721979 GCGGTGAGGATTA 3721967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860772156960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |