Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 297 2e-75 >seq2 Length=4539804 Score = 297 bits (328), Expect = 2e-75 Identities = 619/913 (68%), Gaps = 23/913 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||| ||| ||||||| || |||||| ||||||||||||||||| |||||| | Sbjct 3722870 CATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCTGC 3722811 Query 92850 CAAAGATATCGAATTCACTAGTGATT-----GGATTCTTGGCGTTATAATACTTTTCACC 92904 ||||| || |||| | | | | ||||| | ||||||| ||||| ||| Sbjct 3722810 TAAAGAGAT---ATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATT 3722754 Query 92905 GATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACA 92964 | ||| | ||| || | |||||| |||||||| || |||||| |||||||||| Sbjct 3722753 GCCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTT 3722694 Query 92965 ATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024 |||||| || || |||| || || |||||||| || ||| | |||||||| || |||| Sbjct 3722693 ATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAAC 3722634 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTTGG--TGGTTTTTGTACGACATAATTG 93082 ||||| | || || || || | || |||| | || | || | | Sbjct 3722633 AGCTTCAACAATAATGGCTTCAACA--ACCTTGCGGCCTGGTCTGTGCTTCAAATGACTA 3722576 Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| || || ||||||||||| || | ||| || || || | ||||| |||||| Sbjct 3722575 AACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAA 3722516 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 || || | ||| || | ||||| |||||||| |||||||| || || ||||| ||| Sbjct 3722515 AAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCA 3722456 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262 ||||| || |||||||| || || ||||| || || | ||| ||| | | |||| Sbjct 3722455 GAAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGT---GGAA 3722399 Query 93263 T-TACTGC--TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 | | | | | ||||| | |||||| | |||||| ||||||| || | |||| Sbjct 3722398 TCTTCATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTT 3722339 Query 93320 TCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 ||||| | || | | | || | | || || ||||||||||| | || Sbjct 3722338 AAAATAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCAAA 3722279 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 || || || | ||||| || | ||| || || ||||||||| || || | ||| | | Sbjct 3722278 AGTGAGTAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGA 3722219 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAA-AATCTCTCTACGAGATTTTCATTGACTATACC 93498 ||||| | |||||| ||||| ||| || | ||| | ||||| ||||| || ||||| Sbjct 3722218 GCTTCAGGGATCTGAACTTCA-GAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACC 3722160 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 ||| || || || ||| | || | || | ||||| | |||||| | || | Sbjct 3722159 ATCTGACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAA 3722100 Query 93559 CTT---ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 ||| ||||||||| | ||||| |||||||| | ||| || |||||||||| || Sbjct 3722099 CTTGTTATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGA 3722040 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 |||||| || || ||||| | | ||| || || ||||| | ||||||||| | ||||| Sbjct 3722039 TGCTTCAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980 Query 93676 ACGATTAGGGTTA 93688 || | ||| ||| Sbjct 3721979 GCGGTGAGGATTA 3721967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860772156960