Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 >seq1 Length=5579133 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 111179 GTTTAAAA-ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACG 111237 ||| |||| ||||| ||||||||||| || |||| || ||||| || ||| | || | Sbjct 2794733 GTTGAAAAGATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTG 2794674 Query 111238 GAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCC 111297 ||| || || || ||| | | || || || ||| ||||| ||||| |||| Sbjct 2794673 GAATCCTCTGACACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCT 2794614 Query 111298 GTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCC 111357 ||||||||| | | |||| ||| || || || ||||| ||| | ||| | | Sbjct 2794613 CCTGATCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCT 2794554 Query 111358 GATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| ||||| |||||||| || || || || || || | ||||| || ||||| Sbjct 2794553 GATTACAATATCCAAAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGG 2794498 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||||||||| |||||||| | || || || || |||||| | || ||| || Sbjct 3108883 AAAATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAGTCC 3108824 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 || || ||| | || || ||||| ||||||||||| |||| ||| Sbjct 3108823 TCTGACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCTGAT 3108764 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||| | ||||||| || || || || || |||||| ||| || | ||||| Sbjct 3108763 CAACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGATTAC 3108704 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| || || || || || | || |||||||| || ||||| Sbjct 3108703 AACATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCGTGGTGG 3108654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423039979376800