Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 154 1e-32 seq2 118 9e-22 >seq1 Length=5579133 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||||| ||||| || || |||| ||||| ||||| || | Sbjct 3969009 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACTATCACCCTTGAGGTGGAGTCCTCT 3969068 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| ||||| ||||||||||| || ||||| || || ||| Sbjct 3969069 GACACTATTGACAATGTCAAGAGCAAAATCCAAGACAAGGAAGGAATTCCTCCTGACCAA 3969128 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || || || || || ||||||||| ||| || | || || |||||| Sbjct 3969129 CAACGTCTTATCTTCGCTGGAAAGCAATTAGAGGATGGCCGTACTCTTTCTGACTACAAC 3969188 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || ||| | ||||||||| | || | || || ||| Sbjct 3969189 ATTCAAAAGGAGTCTACCCTTCATTTAGTTCTCCGTCTTCGTGGTGGT 3969236 Score = 150 bits (166), Expect = 2e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 ||| ||||||||| |||||||| || ||||| || |||||||| | || || || |||| Sbjct 2794732 TTGAAAAGATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGG 2794673 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 || || | || || | ||| || |||| || ||||| |||||||| || ||||| | Sbjct 2794672 AATCCTCTGACACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTC 2794613 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | ||||||||||| | || |||||||| || ||||| |||||| || || | || | Sbjct 2794612 CTGATCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTG 2794553 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||| || |||||||| ||||| | || || ||| | || | || || ||| Sbjct 2794552 ATTACAATATCCAAAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGGT 2794497 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || ||||| | || ||||| ||| | || ||||| ||||| || Sbjct 3108883 AAAATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAGTCC 3108824 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || |||| ||||| |||||||| || || ||||| || ||| Sbjct 3108823 TCTGACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCTGAT 3108764 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||||||||||| || || || || |||||||| ||| || || | || |||||| Sbjct 3108763 CAACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGATTAC 3108704 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||| || ||||| | || | |||||||| | || || ||| Sbjct 3108703 AACATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCGTGGTGGT 3108653 Score = 122 bits (134), Expect = 7e-23 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 22205 ATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTG 22264 |||| || | | |||||| || ||||| ||||| | || ||||| || | || |||| Sbjct 3238376 ATACTTTGCTGACGATGCAGATCTTTGTAAAAACCCTTACGGGTAAGACCATTACCCTTG 3238317 Query 22265 AAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTA 22324 | || ||| || | || || | ||| || |||| ||||| ||||| ||||| || | Sbjct 3238316 AGGTTGAATCCTCTGACACTATTGACAATGTCAAGAGCAAAATCCAAGATAAGGAAGGAA 3238257 Query 22325 TTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCG 22384 |||| || |||||||||||| | || ||||| ||||| || | ||||| || || Sbjct 3238256 TTCCTCCTGATCAACAACGTTTGATCTTTGCTGGCAAGCAACTCGAGGACGGACGTACTT 3238197 Query 22385 TCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAG 22444 | || ||||| ||||| ||||| || ||||| | || | |||||||| | || || | Sbjct 3238196 TGTCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCGTGGTG 3238137 Query 22445 GT 22446 || Sbjct 3238136 GT 3238135 >seq2 Length=4539804 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || |||||||| | || | ||||| || | | Sbjct 1045338 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045279 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || ||||| || ||||| || ||||| || |||||| Sbjct 1045278 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045219 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || || | || ||| || || | || ||||||||| Sbjct 1045218 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045159 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || ||||| | ||| | || | || || ||| Sbjct 1045158 ATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGTCTTCGTGGCGGT 1045111 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || ||||| || || || | || | ||||| ||| | || Sbjct 1045566 ATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCC 1045507 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || ||||| || ||||| || ||||| || |||||| Sbjct 1045506 GATACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045447 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || || | || ||| || || | || ||||||||| Sbjct 1045446 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045387 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 1045386 ATTCAAAAGGAGTCTAC 1045370 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || |||||||| | || | ||||| || | | Sbjct 1044882 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044823 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || ||||| || ||||| || ||||| || |||||| Sbjct 1044822 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044763 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || || | || || || || | || ||||||||| Sbjct 1044762 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAAC 1044703 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || ||||| | ||| | || | || || ||| Sbjct 1044702 ATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGTCTTCGTGGCGGT 1044655 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || |||||||| | || | ||||| || | | Sbjct 1044654 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044595 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || ||||| || ||||| || ||||| || |||||| Sbjct 1044594 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044535 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || || | || ||| || || | || ||||||||| Sbjct 1044534 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1044475 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 1044474 ATTCAAAAGGAGTCTAC 1044458 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || |||||||| | || | ||||| || | | Sbjct 1045110 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045051 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || ||||| || ||||| || ||||| || |||||| Sbjct 1045050 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044991 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || || || | || || || || | || ||||||||| Sbjct 1044990 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAAC 1044931 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 1044930 ATTCAAAAGGAGTCTAC 1044914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727979538260