Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq3 152 1e-31
>seq3
Length=2452883
Score = 152 bits (168), Expect = 1e-31
Identities = 390/586 (67%), Gaps = 27/586 (5%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || ||||||| ||||| || || ||||||| |||||||| || |||
Sbjct 1686959 GGTGAGGATCTTTGCAACTGTGAGTTCTCTCTTGCTTATGGTGCCAAGATTCTTCTTAAC 1687018
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
||| || ||| | |||||||| || |||||||| |||||| || || |
Sbjct 1687019 CGTACTCGTCTCCGTCTTAAGCGTGGTCGTCGTTATGGTCTTTGCGGTCCTAACGGTTCC 1687078
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|||||| || || ||||| ||||||| |||||||| | ||||| ||||| || ||
Sbjct 1687079 GGTAAGTCTACCCTTATGCGTGCCATTGTCAACGGTCAAGTTGAAGG-TTTCCCTACTCA 1687137
Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACT 279584
|| | | || || || || |||||||| |||||| ||| | || | ||
Sbjct 1687138 TC-----TCCGTACCGTCTACGTTGAGCACGATATCGACGAGTCTGAAGCCGACACTCCT 1687192
Query 279585 GTGTTCGACTTCCTAACGTCT-GACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAAT 279643
|||| ||| | ||| | ||| | | | |||| | ||| |||||
Sbjct 1687193 TCCGTCGATTTCAT----TCTCCAAGATCCCGCTGTCCCCATCAAGGACCGTGATGAAAT 1687248
Query 279644 CATCCAGAAACTGGAGGCCAATGGTTT---TGATGAAAGAATGCGTAATCTGCCAGTAGG 279700
|| || || ||| || ||| |||||| || ||| |||| | ||
Sbjct 1687249 TGTCAAGGCTTTGAAGGAGAACTCTTTCACCGATGAACTCAT---TAACATGCCTATCGG 1687305
Query 279701 TTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGC 279760
||| || || ||||||||||||||||| |||| || || || || || | | |
Sbjct 1687306 TTCCCTTTCTGGTGGTTGGAAGATGAAATTGGCTCTTACCCGTGCTATGTTCAAGAACCC 1687365
Query 279761 CGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820
|||| | || ||||||||||||| |||||||| | ||| ||| || |||||| |
Sbjct 1687366 CGATATTCTTTTGCTTGATGAGCCTACCAACCATCTTGACGTTGTCAATGTTGCCTGGTT 1687425
Query 279821 AGTG----TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACT 279876
| | | | |||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 1687426 GGAGAACTTTTTGGTTAACCA----AAAGGATGTTTCTTCCATCATTGTCTCTCACGACT 1687481
Query 279877 CTGGCTTCCTAGATGCCGTGTGCTC-TGCCATCATTCACTATGAGC 279921
|||| ||| | || ||| || || ||||| || ||||| ||||
Sbjct 1687482 CTGGTTTCTTGGACCACGT-TGTTCAAGCCATTATCCACTACGAGC 1687526
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 280678 TGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGA 280737
||||||| || | ||||| |||||||||| || ||||||||||| || || |
Sbjct 1688331 TGGGTCTTGATGCTGAGTTGGTTTCTCACTCTCGTATCAAGGGTCTTTCTGGTGGACAAA 1688390
Query 280738 AGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACG 280797
||||||| |||||| | | || | ||| | |||||||| |||||||| ||||
Sbjct 1688391 AGGTCAAGCTTGTCTTGGCTGCTTGTACCTGGTTGCGTCCTCACGTCATCGTTCTTGACG 1688450
Query 280798 AGCCTACCAACTATCTGGACCGCGA 280822
|||||||||||||||| || || ||
Sbjct 1688451 AGCCTACCAACTATCTTGATCGTGA 1688475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836747323364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |