Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 152 1e-31 >seq3 Length=2452883 Score = 152 bits (168), Expect = 1e-31 Identities = 390/586 (67%), Gaps = 27/586 (5%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||||| ||||| || || ||||||| |||||||| || ||| Sbjct 1686959 GGTGAGGATCTTTGCAACTGTGAGTTCTCTCTTGCTTATGGTGCCAAGATTCTTCTTAAC 1687018 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 ||| || ||| | |||||||| || |||||||| |||||| || || | Sbjct 1687019 CGTACTCGTCTCCGTCTTAAGCGTGGTCGTCGTTATGGTCTTTGCGGTCCTAACGGTTCC 1687078 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 |||||| || || ||||| ||||||| |||||||| | ||||| ||||| || || Sbjct 1687079 GGTAAGTCTACCCTTATGCGTGCCATTGTCAACGGTCAAGTTGAAGG-TTTCCCTACTCA 1687137 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACT 279584 || | | || || || || |||||||| |||||| ||| | || | || Sbjct 1687138 TC-----TCCGTACCGTCTACGTTGAGCACGATATCGACGAGTCTGAAGCCGACACTCCT 1687192 Query 279585 GTGTTCGACTTCCTAACGTCT-GACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAAT 279643 |||| ||| | ||| | ||| | | | |||| | ||| ||||| Sbjct 1687193 TCCGTCGATTTCAT----TCTCCAAGATCCCGCTGTCCCCATCAAGGACCGTGATGAAAT 1687248 Query 279644 CATCCAGAAACTGGAGGCCAATGGTTT---TGATGAAAGAATGCGTAATCTGCCAGTAGG 279700 || || || ||| || ||| |||||| || ||| |||| | || Sbjct 1687249 TGTCAAGGCTTTGAAGGAGAACTCTTTCACCGATGAACTCAT---TAACATGCCTATCGG 1687305 Query 279701 TTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGC 279760 ||| || || ||||||||||||||||| |||| || || || || || | | | Sbjct 1687306 TTCCCTTTCTGGTGGTTGGAAGATGAAATTGGCTCTTACCCGTGCTATGTTCAAGAACCC 1687365 Query 279761 CGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 |||| | || ||||||||||||| |||||||| | ||| ||| || |||||| | Sbjct 1687366 CGATATTCTTTTGCTTGATGAGCCTACCAACCATCTTGACGTTGTCAATGTTGCCTGGTT 1687425 Query 279821 AGTG----TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACT 279876 | | | | |||||| ||| ||||||||||| |||||||||||||||||| Sbjct 1687426 GGAGAACTTTTTGGTTAACCA----AAAGGATGTTTCTTCCATCATTGTCTCTCACGACT 1687481 Query 279877 CTGGCTTCCTAGATGCCGTGTGCTC-TGCCATCATTCACTATGAGC 279921 |||| ||| | || ||| || || ||||| || ||||| |||| Sbjct 1687482 CTGGTTTCTTGGACCACGT-TGTTCAAGCCATTATCCACTACGAGC 1687526 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 280678 TGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGA 280737 ||||||| || | ||||| |||||||||| || ||||||||||| || || | Sbjct 1688331 TGGGTCTTGATGCTGAGTTGGTTTCTCACTCTCGTATCAAGGGTCTTTCTGGTGGACAAA 1688390 Query 280738 AGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACG 280797 ||||||| |||||| | | || | ||| | |||||||| |||||||| |||| Sbjct 1688391 AGGTCAAGCTTGTCTTGGCTGCTTGTACCTGGTTGCGTCCTCACGTCATCGTTCTTGACG 1688450 Query 280798 AGCCTACCAACTATCTGGACCGCGA 280822 |||||||||||||||| || || || Sbjct 1688451 AGCCTACCAACTATCTTGATCGTGA 1688475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836747323364