Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 168 1e-36 seq2 152 9e-32 seq3 118 2e-21 >seq1 Length=5579133 Score = 168 bits (186), Expect = 1e-36 Identities = 178/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| || | ||| || |||||||| ||||||||||| ||||| || Sbjct 3108654 CCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAC 3108713 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||||||||||||||| || ||||| || || | |||||| || || ||| Sbjct 3108714 AAAGTACGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGA 3108773 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGC-CTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || ||||| |||||||| || ||||| |||||| || || ||||| | || || || Sbjct 3108774 ATTCCTTCTTTGTCTTGGAT-TTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCAC 3108832 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||| || || || ||||| ||||| |||||||| || |||||| || Sbjct 3108833 CTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTTG 3108884 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || ||||||||||||||||| || ||||| || Sbjct 2794498 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAA 2794557 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || |||||||| ||||| || || | || |||||| || || ||| Sbjct 2794558 AGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGA 2794617 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| |||||| || || ||||| | ||||| || Sbjct 2794618 ATTCCTTCCTTGTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACC 2794677 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || ||||| || || | |||||||| || |||||||| Sbjct 2794678 TCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCAT 2794724 Score = 152 bits (168), Expect = 9e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || || || || || ||||| ||||| ||||| || || || Sbjct 3969235 CCACCACGAAGACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAA 3969176 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| ||||| ||||| || ||||| || || | ||||||||| || ||| Sbjct 3969175 AGAGTACGGCCATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGA 3969116 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGC-CTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || |||||||||||||| || ||||| |||||| || || ||||| | || || || Sbjct 3969115 ATTCCTTCCTTGTCTTGGAT-TTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCAC 3969057 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || ||||| || | ||||||||||| |||||||| || Sbjct 3969056 CTCAAGGGTGATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCATGAT 3969006 Score = 143 bits (158), Expect = 5e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| || | ||| || |||||||| ||||||||||||||||| || Sbjct 3238136 CCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGAC 3238195 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | ||||| || || || || | | |||||| || || ||| Sbjct 3238196 AAAGTACGTCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGA 3238255 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGC-CTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || |||||||| ||||| || ||||| |||||| || || ||||| | ||||| || Sbjct 3238256 ATTCCTTCCTTATCTTGGAT-TTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAAC 3238314 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||||| ||||| || || || |||||||| Sbjct 3238315 CTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 >seq2 Length=4539804 Score = 152 bits (168), Expect = 9e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 || || ||||| || || | |||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 1045112 CCGCCACGAAGACG-AAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGA 1045170 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | |||||||| | ||||| || || || || || | |||||| || || || Sbjct 1045171 AAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGG 1045230 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 |||||||||||| || |||||||| ||| ||| || |||||||| | || || || Sbjct 1045231 AATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAAC 1045290 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || |||||||| || || | ||| ||||| || || ||||| Sbjct 1045291 TTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| ||||| ||||| ||||| || Sbjct 1044428 CCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1044487 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| || || || || || | |||||| || || ||| Sbjct 1044488 AGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1044547 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || |||||||| ||| ||| || |||||||| | || || ||| Sbjct 1044548 ATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACT 1044607 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || |||||||| || || | ||| ||||| || || ||||| Sbjct 1044608 TCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| ||||| ||||| ||||| || Sbjct 1045340 CCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1045399 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| || || || || || | |||||| || || ||| Sbjct 1045400 AGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1045459 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || |||||||| ||| || || ||||| || | ||||| ||| Sbjct 1045460 ATGCCTTCCTTATCCTGAATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAACT 1045519 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| || | ||||||||||| |||||||| Sbjct 1045520 TCCAATGTAATAGTCTTTCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 || || ||||| || || | |||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 1044656 CCGCCACGAAGACG-AAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGA 1044714 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | || ||||| | ||||| || || || || || | |||||| || || || Sbjct 1044715 AAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGG 1044774 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 |||||||||||| || |||||||| ||| ||| || |||||||| | || || || Sbjct 1044775 AATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAAC 1044834 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || |||||||| || || | ||| ||||| || || ||||| Sbjct 1044835 TTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| ||||| ||||| ||||| || Sbjct 1044884 CCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1044943 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| || || || || || | |||||| || || ||| Sbjct 1044944 AGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1045003 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || |||||||| ||| ||| || |||||||| | || || ||| Sbjct 1045004 ATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACT 1045063 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || |||||||| || || | ||| ||||| || || ||||| Sbjct 1045064 TCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110 >seq3 Length=2452883 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 225765 CAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGC 225824 ||||| |||| || ||||| || ||||| || || ||||| |||| || |||| | Sbjct 1687178 CAGACTCGTCGATATCGTGCTCAACGTAGACGGTACGGAGATGAGTAG------GGAAAC 1687125 Query 225825 CCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGAC 225884 | || | || || || |||| ||||| | |||||| ||| || | ||||| |||| Sbjct 1687124 CTTCAACTTGACCGTTGACAATGGCACGCATAAGGGTAGACTTACCGGAACCGTTAGGAC 1687065 Query 225885 CGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCT 225944 || || || ||| || || ||||| | ||| || || ||| || || |||| Sbjct 1687064 CGCAAAGACCATAACGACGACCACGCTTAAGACGGAGACGAGTACGGTTAAGAAGAATCT 1687005 Query 225945 TGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTCGGTCTCCT 226004 || ||||||| ||||| |||||||| || | ||| || |||||||||||||| ||||| Sbjct 1687004 TGGCACCATAAGCAAGAGAGAACTCACAGTTGCAAAGATCCTCACCCTCCTCTTCCTCCT 1686945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622353918880