Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2 154 1e-32 seq1 132 4e-26 >seq2 Length=4539804 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | ||| | ||||| ||||| || ||||||||||||||||| Sbjct 1045109 ATACCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCT 1045168 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||||||||| |||||||| | || ||||| ||||| || ||| Sbjct 1045169 GAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGA 1045228 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || |||||| |||| | |||| |||||| | || || Sbjct 1045229 GGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCA 1045288 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || |||| ||||| |||||||| ||||| Sbjct 1045289 ACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | ||| | ||||| ||||| || ||||||||||||||||| Sbjct 1044653 ATACCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCT 1044712 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||||||||||| |||||||| | || ||||| ||||| || ||| Sbjct 1044713 GAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGA 1044772 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || |||||| |||| | |||| |||||| | || || Sbjct 1044773 GGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCA 1044832 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || |||| ||||| |||||||| ||||| Sbjct 1044833 ACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 Score = 145 bits (160), Expect = 6e-30 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 114145 ATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204 ||| | ||| ||||||||| || | | ||| | || | ||||| || |||||||||| Sbjct 1044417 ATTAAAAAAGACCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGT 1044476 Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264 ||||||| | |||||| |||||||||||| |||||||| | || ||||| |||| Sbjct 1044477 TGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTT 1044536 Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 | || |||||||||||||| || || |||||| |||| | |||| |||||| | Sbjct 1044537 GATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAG 1044596 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || |||| || | ||||| || |||| ||||| |||||||| ||||| Sbjct 1044597 AAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | ||| | || | ||||| || ||||||||||||||||| Sbjct 1044881 ATACCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCT 1044940 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||||||||||| |||||||| | || ||||| ||||| || ||| Sbjct 1044941 GAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGA 1045000 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || |||||| |||| | |||| |||||| | || || Sbjct 1045001 GGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCA 1045060 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || |||| ||||| |||||||| ||||| Sbjct 1045061 ACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | ||| | || | ||||| || ||||||||||||||||| Sbjct 1045337 ATACCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCT 1045396 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||||||||| |||||||| | || ||||| ||||| || ||| Sbjct 1045397 GAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGA 1045456 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || |||||| |||| | |||| ||| |||| ||||| Sbjct 1045457 GGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCA 1045516 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || |||| || | || || || || | || || || ||||||||||||| Sbjct 1045517 ACTTCCAATGTAATAGTCTTTCCAGTTAATGTCTTGACGAAAATCTGCATGG 1045568 >seq1 Length=5579133 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||||||||| | ||||| || |||||||||||||| || Sbjct 3969238 ATACCACCACGAAGACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCA 3969179 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| || | ||| || |||||| |||| ||||| |||||||| ||| Sbjct 3969178 GAAAGAGTACGGCCATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGA 3969119 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| || || || | | |||| ||||| | ||| || Sbjct 3969118 GGAATTCCTTCCTTGTCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCC 3969059 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || || ||||||| ||| || || |||||||||||| Sbjct 3969058 ACCTCAAGGGTGATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCATG 3969008 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | |||||| | || | || || || ||||| ||||||||||| Sbjct 3108653 ACCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGA 3108712 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| | || ||||||||| | || ||||| ||||| || ||||| Sbjct 3108713 CAAAGTACGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGG 3108772 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| || || || | | |||| ||||| | ||| || || Sbjct 3108773 AATTCCTTCTTTGTCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCAC 3108832 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||| || || || || ||||| || ||||| ||||| Sbjct 3108833 CTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCAT 3108880 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || |||||||| || |||||||| Sbjct 2794495 ATACCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCA 2794554 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| ||| || | || || || || | || | || ||||| || ||| Sbjct 2794555 GAAAGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGA 2794614 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | |||| ||||| | |||||| Sbjct 2794615 GGAATTCCTTCCTTGTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCC 2794674 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || |||| ||| || |||||||||||||| Sbjct 2794675 ACCTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCAT 2794724 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | |||||| | || | || || || ||||| ||||| ||||| Sbjct 3238135 ACCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGA 3238194 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| || || ||||| || ||||| |||| | ||| ||||| || ||||| Sbjct 3238195 CAAAGTACGTCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGG 3238254 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || || || || | | |||| ||||| | |||||| || Sbjct 3238255 AATTCCTTCCTTATCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAAC 3238314 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||||||||| |||||||| Sbjct 3238315 CTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134379518448