Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1 131 4e-25
seq2 102 2e-16
>seq1
Length=5579133
Score = 131 bits (144), Expect = 4e-25
Identities = 169/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || | ||||| || || ||||| || || ||||| |
Sbjct 3969235 CCACCACGAAGACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAA 3969176
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || |||||||| ||||| |||||||| ||||| ||||| | ||
Sbjct 3969175 AGAGTACGGCCATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGA 3969116
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|||||||| || || |||||||| ||| || || || || |||| || || || ||
Sbjct 3969115 ATTCCTTCCTTGTCTTGGATTTT-GCTCTTGACATTGTCAATAGTGTCAGAGGACTCCAC 3969057
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476
|| || ||||| ||||| ||||||| |||||||||||| |||||||| ||
Sbjct 3969056 CTCAAGGGTGATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCATGAT 3969006
Score = 118 bits (130), Expect = 3e-21
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | | ||||| |||| ||| || |||||||| || || || |
Sbjct 3108654 CCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAC 3108713
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || ||||| |||||||| || || || ||||| || ||||| |||||| | ||
Sbjct 3108714 AAAGTACGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGA 3108773
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
||||||||||| || |||||||| ||| || || || || |||| || || || ||
Sbjct 3108774 ATTCCTTCTTTGTCTTGGATTTT-GCTCTTGACATTATCAATAGTGTCAGAGGACTCCAC 3108832
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| || || |||||||| || || || || |||||||| || |||||| ||
Sbjct 3108833 CTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTTG 3108884
Score = 98.7 bits (108), Expect = 2e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || | |||| ||| |||||||||||||| || || |
Sbjct 2794498 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAA 2794557
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || || || ||||| || || |||| || |||||| | ||
Sbjct 2794558 AGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGA 2794617
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| || ||||| || || || || || || |||| || ||||| ||
Sbjct 2794618 ATTCCTTCCTTGTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACC 2794677
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || || || || |||| ||||||||| || ||||||||
Sbjct 2794678 TCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCAT 2794724
>seq2
Length=4539804
Score = 102 bits (112), Expect = 2e-16
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || || || | ||| || || |||| || || ||||| || || || || |
Sbjct 1045340 CCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1045399
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || ||||| ||||| | ||| || || || || || ||||| |||||| | ||
Sbjct 1045400 AGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1045459
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| ||||| |||||||| || || ||| || || || || || | |||| ||||| ||
Sbjct 1045460 ATGCCTTCCTTATCCTGAATCTT-GCTCTTTACATTGTCAATGGTATCGGAAGATTCAAC 1045518
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||| | || || ||||| || || | ||||||||||| ||||||||
Sbjct 1045519 TTCCAATGTAATAGTCTTTCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566
Score = 84.2 bits (92), Expect = 5e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || || || | ||| || ||||| | || || ||||| || || || || |
Sbjct 1044656 CCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1044715
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || ||||||||||| | ||| || || || || || ||||| |||||| | ||
Sbjct 1044716 AGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1044775
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| ||||| |||||||| || || ||| || ||||| || || | || || || ||
Sbjct 1044776 ATGCCTTCCTTATCCTGAATCTT-GCTCTTTACGTTATCAATGGTGTCAGAAGACTCAAC 1044834
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||| | || || || || || |||| || ||||| || || |||||
Sbjct 1044835 TTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882
Score = 84.2 bits (92), Expect = 5e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || || || | ||| || || |||| || || ||||| || || || || |
Sbjct 1044884 CCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1044943
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || ||||||||||| | ||| || || || || || ||||| |||||| | ||
Sbjct 1044944 AGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1045003
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
|| ||||| |||||||| || || ||| || ||||| || || | || || || ||
Sbjct 1045004 ATGCCTTCCTTATCCTGAATCTT-GCTCTTTACGTTATCAATGGTGTCAGAAGACTCAAC 1045062
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||| | || || || || || |||| || ||||| || || |||||
Sbjct 1045063 TTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179654339542712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |