Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 118 2e-21 >seq3 Length=2452883 Score = 118 bits (130), Expect = 2e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 334182 GGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCG 334241 ||||| ||||||| |||||||| ||||| || ||||| || || || ||||| | ||| Sbjct 1687131 GGGAAACCTTCAACTTGACCGTTGACAATGGCACGCATAAGGGTAGACTTACCGGAACCG 1687072 Query 334242 TTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGA 334301 || || || || ||||| || || |||||||| ||| || || ||| ||| ||| Sbjct 1687071 TTAGGACCGCAAAGACCATAACGACGACCACGCTTAAGACGGAGACGAGTACGGTTAAGA 1687012 Query 334302 AGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 ||||| || ||||||| || ||||| || ||||| | || ||||||||||| Sbjct 1687011 AGAATCTTGGCACCATAAGCAAGAGAGAACTCACAGTTGCAAAGATCCTCACC 1686959 Score = 93.3 bits (102), Expect = 9e-14 Identities = 190/276 (69%), Gaps = 15/276 (5%) Strand=Plus/Minus Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 |||||| ||||||||||||| || || ||||| ||||| | | | ||||| Sbjct 1687576 CTTCTTAACGAACTCGGACATGTTACCAAGATACTTACGAAGCTTGAA---ACGCTCGTA 1687520 Query 333782 ATGGATAATAGAGGTGCA-AACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 333840 |||||||| | || | ||| ||| | ||| || |||||||| || ||||| | | Sbjct 1687519 GTGGATAATGGCT-TGAACAACGTGGTCCAAGAAACCAGAGTCGTGAGAGACAATGATGG 1687461 Query 333841 ACGAAACGTCCTTAAGGTTGATCA----GGTATTCAATCAGCCACCTCACGTTAGACACA 333896 | ||||| ||||| |||| | || | | | ||| ||| || || || |||| Sbjct 1687460 AAGAAACATCCTTTTGGTTAACCAAAAAGTTCTCCAACCAGGCA----ACATT-GACAAC 1687406 Query 333897 GA-AAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACG 333955 | |||||||||||| ||||| ||||| | || | | | |||| || ||| ||||| Sbjct 1687405 GTCAAGATGGTTGGTAGGCTCATCAAGCAAAAGAATATCGGGGTTCTTGAACATAGCACG 1687346 Query 333956 TGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 | |||||| | |||||| ||||| || || ||||| Sbjct 1687345 GGTAAGAGCCAATTTCATCTTCCAACCACCAGAAAG 1687310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879943477400