Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1 122 6e-23 seq2 120 2e-22 >seq1 Length=5579133 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 |||||||||||||||||| || ||||| |||||||| || ||| | | | || || Sbjct 3969218 AACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCCTC 3969159 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||| || |||||| | || | ||| |||||||| ||||||||||||||||| Sbjct 3969158 TAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTG 3969099 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||||| || ||| | || ||||| || || || || | ||| || || || Sbjct 3969098 GATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTT 3969039 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||| || || ||||| ||||| Sbjct 3969038 TCCGGTCAAAGTCTTGACGAAAATCTGCAT 3969009 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| | ||||| || || || ||||| ||||| ||||| | | | | |||| Sbjct 3238151 AAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCGTCC 3238210 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| |||||||| | |||||||| ||||| || |||||||||||||| || Sbjct 3238211 TCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTATCT 3238270 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||||| || ||| | || ||||| || ||| || || | ||||||||| Sbjct 3238271 TGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATGGTC 3238330 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||||||||| || ||||| Sbjct 3238331 TTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| || || |||||||| || |||||||| ||| | | | || || Sbjct 2794515 AACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTC 2794574 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || || || | ||||| || ||||| || ||||||||||||||||| Sbjct 2794575 CAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTG 2794634 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || || ||| | || ||||| || ||| || |||| ||| || ||||| Sbjct 2794635 AATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTT 2794694 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 ||| |||| ||| || |||||||| ||||| ||| Sbjct 2794695 ACCAGTCAAAGTCTTGACAAAAATCTGCATCTTT 2794728 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| | ||||| || || || ||||| ||||||||||| | | | | | ||| Sbjct 3108669 AAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATCT 3108728 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 ||||| || || |||||| | || | ||| ||||| || ||||||||||| ||||| Sbjct 3108729 TCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCT 3108788 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||||| || ||| | || ||||| || || || || | |||||| || Sbjct 3108789 TGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGTC 3108848 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||||| || || ||||| || ||||||||||| || Sbjct 3108849 TTACCCGTAAGGGTTTTGACGAAAATTTGCATTTT 3108883 >seq2 Length=4539804 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| || ||||| || ||||| ||||||||||| ||| | | ||||||| Sbjct 1044673 AACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTC 1044732 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || ||||| | || | ||| ||||| || ||||| |||||||| || Sbjct 1044733 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1044792 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||||| ||||| | || || || || | || || || || ||||||||||| Sbjct 1044793 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1044852 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| |||| ||||| ||||||||||||||| Sbjct 1044853 ACCAGTCAAGGTTTTGACAAAAATTTGCATA 1044883 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| || ||||| ||||||||||| ||| | | ||||||| | ||| Sbjct 1044908 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGC 1044967 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | || | ||| ||||| || ||||| |||||||| || ||| ||| Sbjct 1044968 TTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTG 1045027 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||||| | || || || || | || || || || |||||||||||||| ||| Sbjct 1045028 CTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTC 1045087 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | ||||| ||||||||||||||| Sbjct 1045088 AAGGTTTTGACAAAAATTTGCATA 1045111 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| || ||||| ||||||||||| ||| | | | ||||| | ||| Sbjct 1044452 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGC 1044511 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | || | ||| ||||| || ||||| |||||||| || ||| ||| Sbjct 1044512 TTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTG 1044571 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||||| | || || || || | || || || || |||||||||||||| ||| Sbjct 1044572 CTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTC 1044631 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | ||||| ||||||||||||||| Sbjct 1044632 AAGGTTTTGACAAAAATTTGCATA 1044655 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| || ||||| || ||||| ||||||||||| ||| | | | ||||| Sbjct 1045129 AACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTC 1045188 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || ||||| | || | ||| ||||| || ||||| |||||||| || Sbjct 1045189 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1045248 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||||| ||||| | || || || || | || || || || ||||||||||| Sbjct 1045249 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1045308 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| |||| ||||| ||||||||||||||| Sbjct 1045309 ACCAGTCAAGGTTTTGACAAAAATTTGCATA 1045339 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| || ||||| ||||||||||| ||| | | | ||||| | ||| Sbjct 1045364 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGC 1045423 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | || | ||| ||||| || ||||| |||||||| || ||| ||| Sbjct 1045424 TTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTG 1045483 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || |||||| | || || |||||| | ||| || || || ||||| || || || || Sbjct 1045484 CTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAATAGTCTTTCCAGTT 1045543 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| ||||| Sbjct 1045544 AATGTCTTGACGAAAATCTGCAT 1045566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391982577140