Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq2 96.9 3e-15
seq1 95.1 1e-14
>seq2
Length=4539804
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/223 (71%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189
|| ||||| || || || |||||||| || || ||||| ||| | | | ||| |
Sbjct 1045130 ACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATC--TGAAAGAGTACGTCCATCTT 1045187
Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249
| | ||| || || || | || | ||||| || || || ||||||||||| ||||| |
Sbjct 1045188 CAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCT 1045247
Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308
|||| || || | || | || | |||||| |||||||| ||||| | |||| |||
Sbjct 1045248 GAATCTTGCTCTTTA-CGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTT 1045306
Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351
|| || || | ||||| |||||||||||||| ||| || ||
Sbjct 1045307 TTACCAGTCAAGGTTTTGACAAAAATTTGCATACCGCCACGAA 1045349
Score = 93.3 bits (102), Expect = 4e-14
Identities = 157/223 (70%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189
|| || || || || || |||||||| || || ||||| ||| | | | ||| |
Sbjct 1044446 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATC--TGAAAGAGTACGTCCATCTT 1044503
Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249
| | ||| || || || | || | ||||| || || || ||||||||||| ||||| |
Sbjct 1044504 CAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCT 1044563
Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308
|||| || || | || | || | |||||| |||||||| ||||| | |||| |||
Sbjct 1044564 GAATCTTGCTCTTTA-CGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTT 1044622
Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351
|| || || | ||||| |||||||||||||| ||| || ||
Sbjct 1044623 TTACCAGTCAAGGTTTTGACAAAAATTTGCATACCGCCACGAA 1044665
Score = 93.3 bits (102), Expect = 4e-14
Identities = 157/223 (70%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189
|| ||||| || || || |||||||| || || ||||| ||| | | | || |
Sbjct 1044674 ACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATC--TGAAAGAGTACGTCCGTCTT 1044731
Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249
| | ||| || || || | || | ||||| || || || ||||||||||| ||||| |
Sbjct 1044732 CAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCT 1044791
Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308
|||| || || | || | || | |||||| |||||||| ||||| | |||| |||
Sbjct 1044792 GAATCTTGCTCTTTA-CGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTT 1044850
Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351
|| || || | ||||| |||||||||||||| ||| || ||
Sbjct 1044851 TTACCAGTCAAGGTTTTGACAAAAATTTGCATACCGCCACGAA 1044893
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/223 (70%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189
|| || || || || || |||||||| || || ||||| ||| | | | || |
Sbjct 1044902 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATC--TGAAAGAGTACGTCCGTCTT 1044959
Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249
| | ||| || || || | || | ||||| || || || ||||||||||| ||||| |
Sbjct 1044960 CAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCT 1045019
Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308
|||| || || | || | || | |||||| |||||||| ||||| | |||| |||
Sbjct 1045020 GAATCTTGCTCTTTA-CGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTT 1045078
Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351
|| || || | ||||| |||||||||||||| ||| || ||
Sbjct 1045079 TTACCAGTCAAGGTTTTGACAAAAATTTGCATACCGCCACGAA 1045121
>seq1
Length=5579133
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || || || | ||| || || || || || || ||||||||||| || |||||
Sbjct 3108654 CCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAC 3108713
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || ||| || || || || || ||| | || | ||||| || || || |||
Sbjct 3108714 AAAGTACGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGA 3108773
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| |||||||| ||||| ||||| |||| || | ||||| || ||||| ||
Sbjct 3108774 ATTCCTTCTTTGTCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACC 3108833
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || |||| ||| || || || || ||||| || |||||||||||
Sbjct 3108834 TCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCAT 3108880
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || || || | ||| || || || || || || ||||||||||| ||||||||
Sbjct 3238136 CCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGAC 3238195
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || || || | ||| || || || | ||||| ||||| || || || |||
Sbjct 3238196 AAAGTACGTCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGA 3238255
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| ||||| |||||||| ||||| |||| || | ||||| || || || ||
Sbjct 3238256 ATTCCTTCCTTATCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACC 3238315
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342
|| || |||| || || || || || ||||||||||| || |||||||
Sbjct 3238316 TCAAGGGTAATGGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCATCG 3238364
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || || || ||||||||||| ||||| | || | ||| ||||| ||
Sbjct 2794522 TGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCCAACTGC 2794581
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| || | ||||||||||| || || || ||||| ||||| || || ||||| ||
Sbjct 2794582 TTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTTA 2794641
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|||| || | ||||| || || || || || || || | ||||| || ||
Sbjct 2794642 CTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTACCAGTC 2794701
Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341
| ||| || |||||||| ||||||
Sbjct 2794702 AAAGTCTTGACAAAAATCTGCATC 2794725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452003177399840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |