Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 seq1 95.1 1e-14 >seq2 Length=4539804 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || ||||| || || || |||||||| || || ||||| ||| | | | ||| | Sbjct 1045130 ACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATC--TGAAAGAGTACGTCCATCTT 1045187 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | ||| || || || | || | ||||| || || || ||||||||||| ||||| | Sbjct 1045188 CAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCT 1045247 Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||| || || | || | || | |||||| |||||||| ||||| | |||| ||| Sbjct 1045248 GAATCTTGCTCTTTA-CGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTT 1045306 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 || || || | ||||| |||||||||||||| ||| || || Sbjct 1045307 TTACCAGTCAAGGTTTTGACAAAAATTTGCATACCGCCACGAA 1045349 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || || || || || || |||||||| || || ||||| ||| | | | ||| | Sbjct 1044446 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATC--TGAAAGAGTACGTCCATCTT 1044503 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | ||| || || || | || | ||||| || || || ||||||||||| ||||| | Sbjct 1044504 CAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCT 1044563 Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||| || || | || | || | |||||| |||||||| ||||| | |||| ||| Sbjct 1044564 GAATCTTGCTCTTTA-CGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTT 1044622 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 || || || | ||||| |||||||||||||| ||| || || Sbjct 1044623 TTACCAGTCAAGGTTTTGACAAAAATTTGCATACCGCCACGAA 1044665 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189 || ||||| || || || |||||||| || || ||||| ||| | | | || | Sbjct 1044674 ACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATC--TGAAAGAGTACGTCCGTCTT 1044731 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | ||| || || || | || | ||||| || || || ||||||||||| ||||| | Sbjct 1044732 CAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCT 1044791 Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||| || || | || | || | |||||| |||||||| ||||| | |||| ||| Sbjct 1044792 GAATCTTGCTCTTTA-CGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTT 1044850 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 || || || | ||||| |||||||||||||| ||| || || Sbjct 1044851 TTACCAGTCAAGGTTTTGACAAAAATTTGCATACCGCCACGAA 1044893 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189 || || || || || || |||||||| || || ||||| ||| | | | || | Sbjct 1044902 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATC--TGAAAGAGTACGTCCGTCTT 1044959 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | ||| || || || | || | ||||| || || || ||||||||||| ||||| | Sbjct 1044960 CAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCT 1045019 Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||| || || | || | || | |||||| |||||||| ||||| | |||| ||| Sbjct 1045020 GAATCTTGCTCTTTA-CGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTT 1045078 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 || || || | ||||| |||||||||||||| ||| || || Sbjct 1045079 TTACCAGTCAAGGTTTTGACAAAAATTTGCATACCGCCACGAA 1045121 >seq1 Length=5579133 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | ||| || || || || || || ||||||||||| || ||||| Sbjct 3108654 CCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAC 3108713 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || || || || || ||| | || | ||||| || || || ||| Sbjct 3108714 AAAGTACGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGA 3108773 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||| ||||| ||||| |||| || | ||||| || ||||| || Sbjct 3108774 ATTCCTTCTTTGTCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACC 3108833 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||| || || || || ||||| || ||||||||||| Sbjct 3108834 TCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCAT 3108880 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | ||| || || || || || || ||||||||||| |||||||| Sbjct 3238136 CCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGAC 3238195 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | ||| || || || | ||||| ||||| || || || ||| Sbjct 3238196 AAAGTACGTCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGA 3238255 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| |||||||| ||||| |||| || | ||||| || || || || Sbjct 3238256 ATTCCTTCCTTATCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACC 3238315 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 || || |||| || || || || || ||||||||||| || ||||||| Sbjct 3238316 TCAAGGGTAATGGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCATCG 3238364 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || || ||||||||||| ||||| | || | ||| ||||| || Sbjct 2794522 TGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCCAACTGC 2794581 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||||||||| || || || ||||| ||||| || || ||||| || Sbjct 2794582 TTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTTA 2794641 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||||| || || || || || || || | ||||| || || Sbjct 2794642 CTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTACCAGTC 2794701 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 | ||| || |||||||| |||||| Sbjct 2794702 AAAGTCTTGACAAAAATCTGCATC 2794725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003177399840