Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 176 6e-39 >seq1 Length=5579133 Score = 176 bits (194), Expect = 6e-39 Identities = 1093/1730 (63%), Gaps = 39/1730 (2%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || || |||||||| || ||||| || |||| ||||||| |||| | ||||| | Sbjct 4229513 CGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTAGTA 4229454 Query 115618 AACTTGGAGAGTGTTGGA-CTTTCCA-TGAAGAGGTTCATACTTTGGGATTGATCGATGA 115675 | || | | ||| | ||| | |||| ||||| ||||||||||||||| |||| Sbjct 4229453 ATTTTTCCGTAGGAAGGATCCTTCAAGTGAAT--GTTCAAACTTTGGGATTGATCAATGA 4229396 Query 115676 AGCGTCCCCGATCCGCCGCCATA-TCAATCACATCCTTCATCTTGATTTCCCACACAGTT 115734 | | || || || || || ||| ||||| ||| ||| | || ||||| || ||| Sbjct 4229395 ATGGGCCACGGTCGGCAGC-ATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 |||| || | ||||| || | || || || || |||||| || ||| | | Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGC 4229277 Query 115795 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 | || | | |||||| |||| ||| | | || || |||||||| || Sbjct 4229276 ATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAAC 4229217 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 || |||||||| || ||||| | || || | | || ||||| | Sbjct 4229216 AGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAA 4229157 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 || ||||||||||| ||||||||| ||| | |||||| | ||| || || || ||||| Sbjct 4229156 GTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATT 4229097 Query 115975 GGTGCCA-TGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTC 116033 ||||| | | | || | || || | || ||| |||||| | || | Sbjct 4229096 GGTGCTACTAACAAAGAA-TTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGC 4229038 Query 116034 CCAGTCGTAGTTGAGCTTTGTC-TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGG 116092 ||| || | || | || | | | |||||| ||| |||| | ||||| |||| Sbjct 4229037 CCAATCCCAAA-GATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACCCTGGG 4228979 Query 116093 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCG 116152 | || || ||||| ||| | ||||||||| ||||| |||| || | ||| | | Sbjct 4228978 ATGCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGAGG 4228919 Query 116153 CCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGT 116212 |||| ||||||||||| || ||||| || || || | || | |||||| | Sbjct 4228918 CCTCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTGGCACCTG 4228859 Query 116213 CGGAATCAAACGCGAGACGGC-ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGG 116271 | || || || | | ||| | || ||| |||| || |||||||| ||||| | Sbjct 4228858 CAGATTCGAATGGTAAACGAAGAGCGAAGAAAG-CATCGGCAAGACCTTGAACACCCAAA 4228800 Query 116272 CCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG----GGATAAAAATT 116327 |||| || ||||| | |||||| | || ||| || || | |||||| | || Sbjct 4228799 CCAACGGGACGATGGCGCATATTGC---TACG-GCGAGCTTCAGGAACAGGATAATAGTT 4228744 Query 116328 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 116387 ||||||| | | || || || || || ||||| || || |||||||||| Sbjct 4228743 AACGTCGATAATCTTGTTGAGGTTACGAGTAACGACCTTCACGACATCGTGAAGCTTTTG 4228684 Query 116388 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 116447 | ||| | | | |||| || | | | | || | || | ||| || || || Sbjct 4228683 GAAATTGTACTTTCC-GTCT-----TTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTT 4228630 Query 116448 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACT 116507 ||| |||| || || | || ||| || | ||| || ||||||| ||||| | Sbjct 4228629 ACAAACAGCAACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCA 4228570 Query 116508 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCAT 116567 ||| || || | ||||| ||||| ||||| ||| || | |||||| || | ||| Sbjct 4228569 GCGAATAGTACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACAT 4228510 Query 116568 ATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGG 116627 | || | || || || ||| || | ||||| || | ||| || | || || Sbjct 4228509 GAAAGGATTACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGG 4228450 Query 116628 CACAGTGGCGTTGGCT-CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTT 116686 | | || | | || ||||| ||| |||||| ||||||||| ||||||| | Sbjct 4228449 TAATGAA-CGACGACCACGGTTCTCCTTCTCATACTTTTCGTAGAGGGCAACAAACTCGT 4228391 Query 116687 CACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCAC 116746 ||||| | | |||| | ||||| |||| || || ||||||| | |||||| | | Sbjct 4228390 CACCCCAAACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTG--CTC 4228333 Query 116747 CCTCC--TCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804 | | ||||| || | ||| || | ||| || ||||| | || |||| | || || Sbjct 4228332 GTTACGTTCAACACGTTGCATAAACAAGTCAGGAATCCACAAGGCATAGAACATTTCGCG 4228273 Query 116805 ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864 ||| || || | || ||| | || | || ||||||||||| | ||| || Sbjct 4228272 TGCGCGGAAATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGC 4228213 Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTAC 116921 ||||| || |||| || | || | | || || | ||| | |||| || Sbjct 4228212 ATGCCAAGGCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAAC 4228153 Query 116922 ATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATT 116981 ||| | || || ||| | || |||| ||| || | || || | || ||||| Sbjct 4228152 ATAACGAGCTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATT 4228093 Query 116982 TGTCCCCCGAATA--CGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCC 117039 || || |||| ||| || |||| |||| | | ||| || | ||||||||||| Sbjct 4228092 AGTTCCAGCAATATACGA-ACCGGTTG-CTCTAATGTTGTGAATATTAATACCAATACCG 4228035 Query 117040 CCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 117099 || || ||| ||||| || ||| | |||| || ||||||| || || || ||| Sbjct 4228034 CCAGCGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAG 4227975 Query 117100 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTG 117159 || | || | | | |||||| || || | ||| || | || ||||| || ||| Sbjct 4227974 TCGTCTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTG 4227915 Query 117160 AAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAG 117219 || || ||||||| || ||| | || | ||| |||||| || ||| || || | Sbjct 4227914 AAAAGAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATA 4227855 Query 117220 ACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACAT 117269 ||| |||||| || ||||| ||||| | | ||| ||||||| ||| Sbjct 4227854 GCAGCTTCAATGTCCTCACCGTGGATACCAACGGCGACACGCATAATCAT 4227805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507169324640