Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq1 176 6e-39
>seq1
Length=5579133
Score = 176 bits (194), Expect = 6e-39
Identities = 1093/1730 (63%), Gaps = 39/1730 (2%)
Strand=Plus/Minus
Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617
|| || |||||||| || ||||| || |||| ||||||| |||| | ||||| |
Sbjct 4229513 CGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTAGTA 4229454
Query 115618 AACTTGGAGAGTGTTGGA-CTTTCCA-TGAAGAGGTTCATACTTTGGGATTGATCGATGA 115675
| || | | ||| | ||| | |||| ||||| ||||||||||||||| ||||
Sbjct 4229453 ATTTTTCCGTAGGAAGGATCCTTCAAGTGAAT--GTTCAAACTTTGGGATTGATCAATGA 4229396
Query 115676 AGCGTCCCCGATCCGCCGCCATA-TCAATCACATCCTTCATCTTGATTTCCCACACAGTT 115734
| | || || || || || ||| ||||| ||| ||| | || ||||| || |||
Sbjct 4229395 ATGGGCCACGGTCGGCAGC-ATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337
Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794
|||| || | ||||| || | || || || || |||||| || ||| | |
Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGC 4229277
Query 115795 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854
| || | | |||||| |||| ||| | | || || |||||||| ||
Sbjct 4229276 ATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAAC 4229217
Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914
|| |||||||| || ||||| | || || | | || ||||| |
Sbjct 4229216 AGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAA 4229157
Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974
|| ||||||||||| ||||||||| ||| | |||||| | ||| || || || |||||
Sbjct 4229156 GTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATT 4229097
Query 115975 GGTGCCA-TGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTC 116033
||||| | | | || | || || | || ||| |||||| | || |
Sbjct 4229096 GGTGCTACTAACAAAGAA-TTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGC 4229038
Query 116034 CCAGTCGTAGTTGAGCTTTGTC-TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGG 116092
||| || | || | || | | | |||||| ||| |||| | ||||| ||||
Sbjct 4229037 CCAATCCCAAA-GATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACCCTGGG 4228979
Query 116093 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCG 116152
| || || ||||| ||| | ||||||||| ||||| |||| || | ||| | |
Sbjct 4228978 ATGCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGAGG 4228919
Query 116153 CCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGT 116212
|||| ||||||||||| || ||||| || || || | || | |||||| |
Sbjct 4228918 CCTCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTGGCACCTG 4228859
Query 116213 CGGAATCAAACGCGAGACGGC-ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGG 116271
| || || || | | ||| | || ||| |||| || |||||||| ||||| |
Sbjct 4228858 CAGATTCGAATGGTAAACGAAGAGCGAAGAAAG-CATCGGCAAGACCTTGAACACCCAAA 4228800
Query 116272 CCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG----GGATAAAAATT 116327
|||| || ||||| | |||||| | || ||| || || | |||||| | ||
Sbjct 4228799 CCAACGGGACGATGGCGCATATTGC---TACG-GCGAGCTTCAGGAACAGGATAATAGTT 4228744
Query 116328 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 116387
||||||| | | || || || || || ||||| || || ||||||||||
Sbjct 4228743 AACGTCGATAATCTTGTTGAGGTTACGAGTAACGACCTTCACGACATCGTGAAGCTTTTG 4228684
Query 116388 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 116447
| ||| | | | |||| || | | | | || | || | ||| || || ||
Sbjct 4228683 GAAATTGTACTTTCC-GTCT-----TTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTT 4228630
Query 116448 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACT 116507
||| |||| || || | || ||| || | ||| || ||||||| ||||| |
Sbjct 4228629 ACAAACAGCAACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCA 4228570
Query 116508 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCAT 116567
||| || || | ||||| ||||| ||||| ||| || | |||||| || | |||
Sbjct 4228569 GCGAATAGTACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACAT 4228510
Query 116568 ATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGG 116627
| || | || || || ||| || | ||||| || | ||| || | || ||
Sbjct 4228509 GAAAGGATTACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGG 4228450
Query 116628 CACAGTGGCGTTGGCT-CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTT 116686
| | || | | || ||||| ||| |||||| ||||||||| ||||||| |
Sbjct 4228449 TAATGAA-CGACGACCACGGTTCTCCTTCTCATACTTTTCGTAGAGGGCAACAAACTCGT 4228391
Query 116687 CACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCAC 116746
||||| | | |||| | ||||| |||| || || ||||||| | |||||| | |
Sbjct 4228390 CACCCCAAACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTG--CTC 4228333
Query 116747 CCTCC--TCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804
| | ||||| || | ||| || | ||| || ||||| | || |||| | || ||
Sbjct 4228332 GTTACGTTCAACACGTTGCATAAACAAGTCAGGAATCCACAAGGCATAGAACATTTCGCG 4228273
Query 116805 ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864
||| || || | || ||| | || | || ||||||||||| | ||| ||
Sbjct 4228272 TGCGCGGAAATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGC 4228213
Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTAC 116921
||||| || |||| || | || | | || || | ||| | |||| ||
Sbjct 4228212 ATGCCAAGGCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAAC 4228153
Query 116922 ATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATT 116981
||| | || || ||| | || |||| ||| || | || || | || |||||
Sbjct 4228152 ATAACGAGCTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATT 4228093
Query 116982 TGTCCCCCGAATA--CGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCC 117039
|| || |||| ||| || |||| |||| | | ||| || | |||||||||||
Sbjct 4228092 AGTTCCAGCAATATACGA-ACCGGTTG-CTCTAATGTTGTGAATATTAATACCAATACCG 4228035
Query 117040 CCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 117099
|| || ||| ||||| || ||| | |||| || ||||||| || || || |||
Sbjct 4228034 CCAGCGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAG 4227975
Query 117100 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTG 117159
|| | || | | | |||||| || || | ||| || | || ||||| || |||
Sbjct 4227974 TCGTCTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTG 4227915
Query 117160 AAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAG 117219
|| || ||||||| || ||| | || | ||| |||||| || ||| || || |
Sbjct 4227914 AAAAGAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATA 4227855
Query 117220 ACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACAT 117269
||| |||||| || ||||| ||||| | | ||| ||||||| |||
Sbjct 4227854 GCAGCTTCAATGTCCTCACCGTGGATACCAACGGCGACACGCATAATCAT 4227805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613507169324640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |