Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 5e-14 >seq1 Length=5579133 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| || || || | || |||||||||||| || || || || | ||| || | Sbjct 3238147 ACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCC 3238206 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||| |||||||| || || ||||| || || || || | || | | ||||| Sbjct 3238207 GTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTT 3238266 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||| || |||||| | | | ||||| ||||| || || | || || Sbjct 3238267 ATCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAAT 3238326 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || ||||| || ||||| |||||||| ||||| Sbjct 3238327 GGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| |||||||||||||| || || ||||| || | || || | |||||| ||||| || Sbjct 2794533 CTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCCAACTGCTTTCCGGCAAA 2794592 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || || || | || | | ||||||||| ||||| |||||| | Sbjct 2794593 AATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTTACTCTTGACATT 2794652 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| |||||||| || | || || ||||| || |||| || || || Sbjct 2794653 GTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGAC 2794712 Query 46582 AAAGATTTGCATTTT 46596 ||| || ||||| || Sbjct 2794713 AAAAATCTGCATCTT 2794727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238371738080