Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 >seq1 Length=5579133 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| ||||| || ||||| || || || ||| | || || ||| || Sbjct 3108883 AAAATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAGTCC 3108824 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||| | | || | | |||| ||||||| |||||||| |||||||| | | Sbjct 3108823 TCTGACACTATTGATAATG--TCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCTG 3108766 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | ||||| || || |||| ||| || || ||| | || || | || || | || | Sbjct 3108765 ATCAACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGATT 3108706 Query 38419 ACAACATCCAAAAGGA 38434 |||||||||||||||| Sbjct 3108705 ACAACATCCAAAAGGA 3108690 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || || |||||| | || || ||| || | Sbjct 3969009 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACTATCACCCTTGAGGTGGAGTCCTCT 3969068 Query 38304 GACAGCGTGCA-AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | || | | |||| ||||||| ||||| || |||||||| | |||| Sbjct 3969069 GACACTATTGACAATG--TCAAGAGCAAAATCCAAGACAAGGAAGGAATTCCTCCTGACC 3969126 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || || || | ||| || || || | || || | || || || ||||||| Sbjct 3969127 AACAACGTCTTATCTTCGCTGGAAAGCAATTAGAGGATGGCCGTACTCTTTCTGACTACA 3969186 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| |||||||| | || || ||||| || || ||| Sbjct 3969187 ACATTCAAAAGGAGTCTACCCTTCATTTAGTTCTCCGT 3969224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172774991360