Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 2e-12 >seq2 Length=4539804 Score = 87.8 bits (96), Expect = 2e-12 Identities = 216/321 (67%), Gaps = 9/321 (3%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||| ||||| || || ||||| |||| ||| ||| ||||||||||| | Sbjct 4317577 AAAACCGTCCATTTCAACTAATAGCTGATTAAGAGTGCTTTCGCGTTCATCATTGGAAC- 4317519 Query 16034 CATA----CCACCAGCACTGCGTTGCTTTCCCACG-GCATCAATCTCATCAATGAAGACG 16088 || | || ||| | | ||||||| ||| |||||||| ||||| ||||| | Sbjct 4317518 CAAATTGTCCTCCACGTCCTC-TTGCTTTACCAATTGCATCAATTTCATCTATGAAAATA 4317460 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 || || || || | |||||| |||| ||||| | ||| || | || ||| Sbjct 4317459 ATACAAGGAGCGTTCTTGCGAGCAGTAGCAAAAAGATCTCTTACGCGGGAAGGTCCAACA 4317400 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACATTGGATGAAGGGGACATTAGATTC 16207 ||||||||||| || | ||| | | | || ||| | | || ||||| |||| ||| Sbjct 4317399 CCAACAAACATTTCAAGAAACTCAGAACCTGACACACT-TAAAAAAGGGACGTTAGCTTC 4317341 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| || ||||| || |||||||| ||||| ||||| || ||| | || | ||| Sbjct 4317340 ACCAGCGGTGGCTTTAGCAAGAAGAGTTTTACCGGTACCAGGAGGACCAGAAAGAATGGC 4317281 Query 16268 ACCTCGTGGAATCTTGGCGCC 16288 ||| || ||||| || || || Sbjct 4317280 ACCACGAGGAATTTTAGCCCC 4317260 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || ||||| ||| || ||||||||||| ||||| || || | |||||| |||||| Sbjct 3722424 GCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTGGATCGTTTGCCTCTATTTTTTGGCTT 3722483 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 ||||| || || || ||||| ||||| || ||||| || | || | |||||| ||| Sbjct 3722484 AAGAAACGTGGACTTATGCCTGGTCTTACTTTTTCCAATGAATTGATTTGTCGTGATGAG 3722543 Query 102312 GGACTCCACCAAGAGTTTGC 102331 || || ||| || ||||| Sbjct 3722544 GGTCTTCACACCGACTTTGC 3722563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742368962880