Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1 212 7e-50
seq2 91.5 2e-13
>seq1
Length=5579133
Score = 212 bits (234), Expect = 7e-50
Identities = 1116/1756 (64%), Gaps = 77/1756 (4%)
Strand=Plus/Minus
Query 109510 TGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTA 109569
|| || ||||| |||||| | ||||| || || || ||| || | | |||||| |||
Sbjct 4229411 TGGGATTGATCAATGAATGGGCCACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTA 4229352
Query 109570 ATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGA 109629
|| ||||| || || ||||| | || ||| | || | ||||| || || |||
Sbjct 4229351 ATCTCCCATACGGTTTTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGG 4229292
Query 109630 ATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTT 109689
|| || ||| || | | || | | |||||| || | ||| | | | ||
Sbjct 4229291 ATGGATCCATCAAGCATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCA 4229232
Query 109690 TTGAGATCGTCAACAAGATGCTTG--TTGACCACGACAAATTCACCAGCAAGTGTGCGTC 109747
|||||| | ||| | | || ||||| | |||||||||| ||| || |
Sbjct 4229231 ACGAGATCCTT--CAACAGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGC 4229174
Query 109748 GGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAG 109807
| |||| ||||||| || || || || |||||||||||| || |||||||| | |
Sbjct 4229173 GTTGGTACATGTTAGAAGTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATG 4229114
Query 109808 TGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT---TCG---TCT 109861
| ||||| || ||||| || || | | | | || || | || | | | |||
Sbjct 4229113 TTGAAGCAGTAGGCATTGGTGCTACTAACAAAGAATTACGAATTCCGTGTTTAGCAATCT 4229054
Query 109862 TTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCC 109921
|| || ||| | | || ||||||| || || | | ||| | | ||
Sbjct 4229053 TTTCCT--TCA---ACT-CGGCCCAATCCCAAAGATCGGTGGGATTAA------CGTTCC 4229006
Query 109922 ACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACC 109981
|||| || || | | ||||| | |||||||| || | ||||||| || | |
Sbjct 4229005 ACATGTCATACTGTAAAATACCCTGGGATGCAGGAGATCCTTCATAACTCTCATATGTAC 4228946
Query 109982 CCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAA 110041
|||| |||| ||| | |||| | || ||||| || || || || || || || || || |
Sbjct 4228945 CCTCTACCTGGGCAATCTCGCAAGAGGCCTCAAGGGCTGCGTGGTAAATTGTTTCGAAGA 4228886
Query 110042 TATG-------AGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAA-G 110093
| || ||| ||| || || || || || | ||||| || | || | | |
Sbjct 4228885 TTTGGATGTTTAGC-TTCTTG--GC---AC-CTGCAGATTCGAATGGTAAACGAAGAGCG 4228833
Query 110094 AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA 110153
|| ||| |||| || ||||| |||||||| | ||||| ||| ||||| ||| ||
Sbjct 4228832 AAGAAAG-CATCGGCAAGACCTTGAACACCCAAACCAACGGGACGATGGCGCATATTGCT 4228774
Query 110154 GCGTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTT 110210
|| ||||| ||| || || ||| |||| |||||| | | ||||| ||
Sbjct 4228773 ACGGCGAGC---TTCAGGAACAGGATAATAGTTAACGTCGATAATCTTGTTGAGGTTACG 4228717
Query 110211 CGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATT 110270
|| || |||| || || || || || | | ||| | || ||| ||||| ||
Sbjct 4228716 AGTAACGACCTTCACGACATCGTGAAGCTTTTGGAAATTGTAC-TTTCCGTCT-----TT 4228663
Query 110271 GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGT 110330
| | || |||| | ||||| || ||||| || || |||| | ||||| |
Sbjct 4228662 AATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAAACAGCAACTTCGTCAGGAGAAGA 4228603
Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390
|||||| | ||| || ||||||| ||| || | ||| ||| | |||||||||||
Sbjct 4228602 GTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGAATAGTACCAACATTCTTCTGATT 4228543
Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450
|| || |||||||| ||||||||| | |||| | || |||||||||| |||||
Sbjct 4228542 GGACTTACGGTTGCATGAATCCTTATACAACATGAAAGGATTACCAGTTTCAACTTGTGA 4228483
Query 110451 CTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGA-GACCT---- 110505
| |||||||| | ||| || | || || | | | ||| ||||
Sbjct 4228482 TTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTAATG-------AACGACGACCACGGT 4228430
Query 110506 --TCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGAC 110563
|||| ||| ||||| ||| | | | |||| || | || | ||||| | | ||
Sbjct 4228429 TCTCCTTCTCATACTTTTCGTAGAGGGCAACAAACTCGTCACCCCAAACATCTGCCAAAC 4228370
Query 110564 CCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCC--TCAACCCTCTTCAT 110621
| |||| | ||| ||||||| || ||| || | | | | ||||| | | |||
Sbjct 4228369 CTGGAGCCTCATTGGGGCAGAAGAAGGTCCA--TTGCTCGTTACGTTCAACACGTTGCAT 4228312
Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681
|||| |||||||||||||| || |||| | || || || || || | ||
Sbjct 4228311 AAACAAGTCAGGAATCCACAAGGCATAGAACATTTCGCGTGCGCGGAAATCCTCGTTGCC 4228252
Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC 110741
|| | || || || ||||||||||| | ||| | ||||| || || | |||| |
Sbjct 4228251 ATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAGGCTCCAAATAGGC 4228192
Query 110742 AGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAA 110798
|| | || || ||| | ||| | |||| |||||| || |||||| ||| |
Sbjct 4228191 TGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAGCTGTGTTGTTGTA 4228132
Query 110799 GACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACT 110857
|| | | ||| || | |||||| | ||| |||||| || || ||| | | ||
Sbjct 4228131 AACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAGTTCCAGCAATATACGAACC 4228072
Query 110858 TATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTG 110917
||| | | ||||| ||| |||| ||||||||||| || || ||| || |
Sbjct 4228071 GGTTG-CTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCTTGGAGATCATAG 4228013
Query 110918 CACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGA 110976
||||| ||| ||||||| | || || || ||||| || || | || | | || ||
Sbjct 4228012 CACACATCT-TGAGTGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCATCGTAACGAGG 4227954
Query 110977 AAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036
|| |||||||| | || |||||||| || || |||||||| || || |||| |||||
Sbjct 4227953 AAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTGGTGAAGCATGG 4227894
Query 111037 ATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCG 111096
| || | ||| |||||| |||||||| || | || | | || | ||||
Sbjct 4227893 GTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAGCTTCAATGTCCTCACCG 4227834
Query 111097 TGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTT-CCATC 111155
|| ||||||| ||| || ||||| | ||||| ||||| || | | |||| || ||
Sbjct 4227833 TGGATACCAACGGCGACACGCATAATCATATGCTGAGGGCGCTC-AGCAACTTTGCCGTC 4227775
Query 111156 AACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATC 111215
| |||| | ||| ||||| ||||||| |||||| | || ||||||
Sbjct 4227774 GATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAGCCAAAGAAATTGTAAGTGAAATC 4227715
Query 111216 ACGATCTGATTTGATA 111231
|||||| || |||||
Sbjct 4227714 ACGATCGTATATGATA 4227699
>seq2
Length=4539804
Score = 91.5 bits (100), Expect = 2e-13
Identities = 214/318 (67%), Gaps = 5/318 (2%)
Strand=Plus/Minus
Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652
|||||||||||||| | ||||| || | || ||| || ||||| |||||
Sbjct 4317576 AAACCGTCCATTTCAACTAATAGCTGATTAAGAGTGCTTTCGCGTTCATCATTGGAACCA 4317517
Query 11653 ATACCACCTGC-CGAACGCTT--CTTACCGACAGCGTCAATCTCATCGATGAATACGATA 11709
| ||| | || | ||| ||||| | || ||||| ||||| ||||| | |||
Sbjct 4317516 AATTGTCCTCCACGTCCTCTTGCTTTACCAATTGCATCAATTTCATCTATGAAAATAATA 4317457
Query 11710 CACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769
|| || ||| || || | ||||| || | ||| || | |||||||||
Sbjct 4317456 CAAGGAGCGTTCTTGCGAGCAGTAGCAAAAAGATCTCTTACGCGGGAAGGTCCAACACCA 4317397
Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACC 11828
|| ||||| |||| || | | | || ||||| || ||||| || |||| |||||
Sbjct 4317396 ACAAACATTTCAAGAAACTCAGAACCTGACACACTTAAAAAAGGG-ACGTTAGCTTCACC 4317338
Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888
|||| ||||| ||| || ||||| ||||| |||||||| | ||||| |||| ||| ||
Sbjct 4317337 AGCGGTGGCTTTAGCAAGAAGAGTTTTACCGGTACCAGGAGGACCAGAAAGAATGGCACC 4317278
Query 11889 ACGGGGGATCTTGGCACC 11906
||| || || || || ||
Sbjct 4317277 ACGAGGAATTTTAGCCCC 4317260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975970551200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |