Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 212 7e-50 seq2 91.5 2e-13 >seq1 Length=5579133 Score = 212 bits (234), Expect = 7e-50 Identities = 1116/1756 (64%), Gaps = 77/1756 (4%) Strand=Plus/Minus Query 109510 TGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTA 109569 || || ||||| |||||| | ||||| || || || ||| || | | |||||| ||| Sbjct 4229411 TGGGATTGATCAATGAATGGGCCACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTA 4229352 Query 109570 ATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGA 109629 || ||||| || || ||||| | || ||| | || | ||||| || || ||| Sbjct 4229351 ATCTCCCATACGGTTTTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGG 4229292 Query 109630 ATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTT 109689 || || ||| || | | || | | |||||| || | ||| | | | || Sbjct 4229291 ATGGATCCATCAAGCATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCA 4229232 Query 109690 TTGAGATCGTCAACAAGATGCTTG--TTGACCACGACAAATTCACCAGCAAGTGTGCGTC 109747 |||||| | ||| | | || ||||| | |||||||||| ||| || | Sbjct 4229231 ACGAGATCCTT--CAACAGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGC 4229174 Query 109748 GGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAG 109807 | |||| ||||||| || || || || |||||||||||| || |||||||| | | Sbjct 4229173 GTTGGTACATGTTAGAAGTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATG 4229114 Query 109808 TGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT---TCG---TCT 109861 | ||||| || ||||| || || | | | | || || | || | | | ||| Sbjct 4229113 TTGAAGCAGTAGGCATTGGTGCTACTAACAAAGAATTACGAATTCCGTGTTTAGCAATCT 4229054 Query 109862 TTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCC 109921 || || ||| | | || ||||||| || || | | ||| | | || Sbjct 4229053 TTTCCT--TCA---ACT-CGGCCCAATCCCAAAGATCGGTGGGATTAA------CGTTCC 4229006 Query 109922 ACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACC 109981 |||| || || | | ||||| | |||||||| || | ||||||| || | | Sbjct 4229005 ACATGTCATACTGTAAAATACCCTGGGATGCAGGAGATCCTTCATAACTCTCATATGTAC 4228946 Query 109982 CCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAA 110041 |||| |||| ||| | |||| | || ||||| || || || || || || || || || | Sbjct 4228945 CCTCTACCTGGGCAATCTCGCAAGAGGCCTCAAGGGCTGCGTGGTAAATTGTTTCGAAGA 4228886 Query 110042 TATG-------AGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAA-G 110093 | || ||| ||| || || || || || | ||||| || | || | | | Sbjct 4228885 TTTGGATGTTTAGC-TTCTTG--GC---AC-CTGCAGATTCGAATGGTAAACGAAGAGCG 4228833 Query 110094 AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA 110153 || ||| |||| || ||||| |||||||| | ||||| ||| ||||| ||| || Sbjct 4228832 AAGAAAG-CATCGGCAAGACCTTGAACACCCAAACCAACGGGACGATGGCGCATATTGCT 4228774 Query 110154 GCGTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTT 110210 || ||||| ||| || || ||| |||| |||||| | | ||||| || Sbjct 4228773 ACGGCGAGC---TTCAGGAACAGGATAATAGTTAACGTCGATAATCTTGTTGAGGTTACG 4228717 Query 110211 CGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATT 110270 || || |||| || || || || || | | ||| | || ||| ||||| || Sbjct 4228716 AGTAACGACCTTCACGACATCGTGAAGCTTTTGGAAATTGTAC-TTTCCGTCT-----TT 4228663 Query 110271 GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGT 110330 | | || |||| | ||||| || ||||| || || |||| | ||||| | Sbjct 4228662 AATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAAACAGCAACTTCGTCAGGAGAAGA 4228603 Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 |||||| | ||| || ||||||| ||| || | ||| ||| | ||||||||||| Sbjct 4228602 GTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGAATAGTACCAACATTCTTCTGATT 4228543 Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450 || || |||||||| ||||||||| | |||| | || |||||||||| ||||| Sbjct 4228542 GGACTTACGGTTGCATGAATCCTTATACAACATGAAAGGATTACCAGTTTCAACTTGTGA 4228483 Query 110451 CTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGA-GACCT---- 110505 | |||||||| | ||| || | || || | | | ||| |||| Sbjct 4228482 TTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTAATG-------AACGACGACCACGGT 4228430 Query 110506 --TCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGAC 110563 |||| ||| ||||| ||| | | | |||| || | || | ||||| | | || Sbjct 4228429 TCTCCTTCTCATACTTTTCGTAGAGGGCAACAAACTCGTCACCCCAAACATCTGCCAAAC 4228370 Query 110564 CCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCC--TCAACCCTCTTCAT 110621 | |||| | ||| ||||||| || ||| || | | | | ||||| | | ||| Sbjct 4228369 CTGGAGCCTCATTGGGGCAGAAGAAGGTCCA--TTGCTCGTTACGTTCAACACGTTGCAT 4228312 Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681 |||| |||||||||||||| || |||| | || || || || || | || Sbjct 4228311 AAACAAGTCAGGAATCCACAAGGCATAGAACATTTCGCGTGCGCGGAAATCCTCGTTGCC 4228252 Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC 110741 || | || || || ||||||||||| | ||| | ||||| || || | |||| | Sbjct 4228251 ATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAGGCTCCAAATAGGC 4228192 Query 110742 AGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAA 110798 || | || || ||| | ||| | |||| |||||| || |||||| ||| | Sbjct 4228191 TGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAGCTGTGTTGTTGTA 4228132 Query 110799 GACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACT 110857 || | | ||| || | |||||| | ||| |||||| || || ||| | | || Sbjct 4228131 AACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAGTTCCAGCAATATACGAACC 4228072 Query 110858 TATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTG 110917 ||| | | ||||| ||| |||| ||||||||||| || || ||| || | Sbjct 4228071 GGTTG-CTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCTTGGAGATCATAG 4228013 Query 110918 CACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGA 110976 ||||| ||| ||||||| | || || || ||||| || || | || | | || || Sbjct 4228012 CACACATCT-TGAGTGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCATCGTAACGAGG 4227954 Query 110977 AAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036 || |||||||| | || |||||||| || || |||||||| || || |||| ||||| Sbjct 4227953 AAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTGGTGAAGCATGG 4227894 Query 111037 ATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCG 111096 | || | ||| |||||| |||||||| || | || | | || | |||| Sbjct 4227893 GTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAGCTTCAATGTCCTCACCG 4227834 Query 111097 TGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTT-CCATC 111155 || ||||||| ||| || ||||| | ||||| ||||| || | | |||| || || Sbjct 4227833 TGGATACCAACGGCGACACGCATAATCATATGCTGAGGGCGCTC-AGCAACTTTGCCGTC 4227775 Query 111156 AACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATC 111215 | |||| | ||| ||||| ||||||| |||||| | || |||||| Sbjct 4227774 GATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAGCCAAAGAAATTGTAAGTGAAATC 4227715 Query 111216 ACGATCTGATTTGATA 111231 |||||| || ||||| Sbjct 4227714 ACGATCGTATATGATA 4227699 >seq2 Length=4539804 Score = 91.5 bits (100), Expect = 2e-13 Identities = 214/318 (67%), Gaps = 5/318 (2%) Strand=Plus/Minus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 |||||||||||||| | ||||| || | || ||| || ||||| ||||| Sbjct 4317576 AAACCGTCCATTTCAACTAATAGCTGATTAAGAGTGCTTTCGCGTTCATCATTGGAACCA 4317517 Query 11653 ATACCACCTGC-CGAACGCTT--CTTACCGACAGCGTCAATCTCATCGATGAATACGATA 11709 | ||| | || | ||| ||||| | || ||||| ||||| ||||| | ||| Sbjct 4317516 AATTGTCCTCCACGTCCTCTTGCTTTACCAATTGCATCAATTTCATCTATGAAAATAATA 4317457 Query 11710 CACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769 || || ||| || || | ||||| || | ||| || | ||||||||| Sbjct 4317456 CAAGGAGCGTTCTTGCGAGCAGTAGCAAAAAGATCTCTTACGCGGGAAGGTCCAACACCA 4317397 Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACC 11828 || ||||| |||| || | | | || ||||| || ||||| || |||| ||||| Sbjct 4317396 ACAAACATTTCAAGAAACTCAGAACCTGACACACTTAAAAAAGGG-ACGTTAGCTTCACC 4317338 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 |||| ||||| ||| || ||||| ||||| |||||||| | ||||| |||| ||| || Sbjct 4317337 AGCGGTGGCTTTAGCAAGAAGAGTTTTACCGGTACCAGGAGGACCAGAAAGAATGGCACC 4317278 Query 11889 ACGGGGGATCTTGGCACC 11906 ||| || || || || || Sbjct 4317277 ACGAGGAATTTTAGCCCC 4317260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975970551200