Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 6e-13 >seq2 Length=4539804 Score = 89.7 bits (98), Expect = 6e-13 Identities = 233/348 (67%), Gaps = 12/348 (3%) Strand=Plus/Plus Query 169184 ACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCG 169243 ||| || || || || ||||||| ||| ||||||||||||||| | | ||||||| || Sbjct 1978935 ACCTTTAATATGTGATCCATCATGATCTTGATCTGTCATAATCATTAAATGACCATAACG 1978994 Query 169244 AAGTTCAGAAACATCTTGGT---AGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTTGAG 169300 ||| | ||||| ||| ||| |||| | |||| |||| ||| ||||||| Sbjct 1978995 AAGACCTTTCACATC--GGTATAAGTTTTTTTATGAGTGAA-TCCCATGATTTTCTTGAT 1979051 Query 169301 ATCGTTGAA-CTCTTGGTTTGATGTGAGCTGTGCCACT--GAAGCGTCGCGGACATTCTT 169357 | | ||||| |||| ||| || | | | || | | ||||| || || |||||| Sbjct 1979052 AGC-TTGAATTTCTTTGTT--ATTTAGGATTTGGGAATGAGAAGCCTCCCGTACATTCAG 1979108 Query 169358 ACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGC 169417 || || | | ||||| || ||||| | || | ||||| || |||||||| Sbjct 1979109 TAGTTTTCCTCTTAACGGAAAAACTCCATAATAGTCTCTACCAACAACACTGAGACCCGA 1979168 Query 169418 GACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTG 169477 || || | | ||| || ||||| ||||| |||| || ||| |||||| |||| Sbjct 1979169 AACAGCTAAAGATTTAGCAGAATCTCCCTCAGTGAGGATAAGGACACACTTATGGGATTC 1979228 Query 169478 CGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAAT 169525 |||||||| || |||||||| || | |||| | ||| || || Sbjct 1979229 TTTGGTACCCGCTTTATTTGCGTCTTCGAGTTTGGTTAAACCCGTTAT 1979276 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| ||||||||||| || |||| | |||||| || || || || Sbjct 3722564 GGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACC 3722505 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||| || || || ||||| | |||| |||||| | || || || || |||||||| Sbjct 3722504 AGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGAT 3722445 Query 117393 ACCCTCCACACACGCAAACGCAA 117415 ||| || ||| ||||| |||| Sbjct 3722444 ACCTTCTACAGCAGCAAAGGCAA 3722422 Score = 82.4 bits (90), Expect = 9e-11 Identities = 164/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 9359 TTGCTTTCCCACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 9417 ||||||| ||| |||||||| ||||| ||||| | |||||| || || | ||| | Sbjct 4317497 TTGCTTTACCAATTGCATCAATTTCATCTATGAAAATAATACAAGGAGCGTTCTTGCGAG 4317438 Query 9418 CGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9477 | | |||| ||||| | || | | || |||||||||||||| || | ||| | Sbjct 4317437 CAGTAGCAAAAAGATCTCTTACGCGGGAAGGTCCAACACCAACAAACATTTCAAGAAACT 4317378 Query 9478 TTGCGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 9536 | | || ||| | | || ||||| |||| |||||| || ||||| || ||| Sbjct 4317377 CAGAACCTGACACACT-TAAAAAAGGGACGTTAGCTTCACCAGCGGTGGCTTTAGCAAGA 4317319 Query 9537 AGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||||| ||||| ||||| || ||| | || | |||||| || ||||| || || || Sbjct 4317318 AGAGTTTTACCGGTACCAGGAGGACCAGAAAGAATGGCACCACGAGGAATTTTAGCCCC 4317260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980770500960