Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq2 89.7 6e-13
>seq2
Length=4539804
Score = 89.7 bits (98), Expect = 6e-13
Identities = 233/348 (67%), Gaps = 12/348 (3%)
Strand=Plus/Plus
Query 169184 ACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCG 169243
||| || || || || ||||||| ||| ||||||||||||||| | | ||||||| ||
Sbjct 1978935 ACCTTTAATATGTGATCCATCATGATCTTGATCTGTCATAATCATTAAATGACCATAACG 1978994
Query 169244 AAGTTCAGAAACATCTTGGT---AGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTTGAG 169300
||| | ||||| ||| ||| |||| | |||| |||| ||| |||||||
Sbjct 1978995 AAGACCTTTCACATC--GGTATAAGTTTTTTTATGAGTGAA-TCCCATGATTTTCTTGAT 1979051
Query 169301 ATCGTTGAA-CTCTTGGTTTGATGTGAGCTGTGCCACT--GAAGCGTCGCGGACATTCTT 169357
| | ||||| |||| ||| || | | | || | | ||||| || || ||||||
Sbjct 1979052 AGC-TTGAATTTCTTTGTT--ATTTAGGATTTGGGAATGAGAAGCCTCCCGTACATTCAG 1979108
Query 169358 ACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGC 169417
|| || | | ||||| || ||||| | || | ||||| || ||||||||
Sbjct 1979109 TAGTTTTCCTCTTAACGGAAAAACTCCATAATAGTCTCTACCAACAACACTGAGACCCGA 1979168
Query 169418 GACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTG 169477
|| || | | ||| || ||||| ||||| |||| || ||| |||||| ||||
Sbjct 1979169 AACAGCTAAAGATTTAGCAGAATCTCCCTCAGTGAGGATAAGGACACACTTATGGGATTC 1979228
Query 169478 CGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAAT 169525
|||||||| || |||||||| || | |||| | ||| || ||
Sbjct 1979229 TTTGGTACCCGCTTTATTTGCGTCTTCGAGTTTGGTTAAACCCGTTAT 1979276
Score = 82.4 bits (90), Expect = 9e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || ||| ||||||||||| || |||| | |||||| || || || ||
Sbjct 3722564 GGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACC 3722505
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392
||||| || || || ||||| | |||| |||||| | || || || || ||||||||
Sbjct 3722504 AGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGAT 3722445
Query 117393 ACCCTCCACACACGCAAACGCAA 117415
||| || ||| ||||| ||||
Sbjct 3722444 ACCTTCTACAGCAGCAAAGGCAA 3722422
Score = 82.4 bits (90), Expect = 9e-11
Identities = 164/239 (69%), Gaps = 3/239 (1%)
Strand=Plus/Minus
Query 9359 TTGCTTTCCCACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 9417
||||||| ||| |||||||| ||||| ||||| | |||||| || || | ||| |
Sbjct 4317497 TTGCTTTACCAATTGCATCAATTTCATCTATGAAAATAATACAAGGAGCGTTCTTGCGAG 4317438
Query 9418 CGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9477
| | |||| ||||| | || | | || |||||||||||||| || | ||| |
Sbjct 4317437 CAGTAGCAAAAAGATCTCTTACGCGGGAAGGTCCAACACCAACAAACATTTCAAGAAACT 4317378
Query 9478 TTGCGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 9536
| | || ||| | | || ||||| |||| |||||| || ||||| || |||
Sbjct 4317377 CAGAACCTGACACACT-TAAAAAAGGGACGTTAGCTTCACCAGCGGTGGCTTTAGCAAGA 4317319
Query 9537 AGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595
||||| ||||| ||||| || ||| | || | |||||| || ||||| || || ||
Sbjct 4317318 AGAGTTTTACCGGTACCAGGAGGACCAGAAAGAATGGCACCACGAGGAATTTTAGCCCC 4317260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980770500960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |