Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 >seq1 Length=5579133 Score = 114 bits (126), Expect = 1e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 154939 TTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGAC 154998 |||| || ||||||||||||| || ||||||| || || | |||||| ||| || Sbjct 183835 TTCACGAACATGGTGGTCAGGTTTACTTTGATGGTGCTAACATGAATGCAATGGTTGGTT 183776 Query 154999 TAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCT 155058 || || | |||| |||||| ||||| ||||| |||| | ||||| ||||| | Sbjct 183775 TATGCAAGGCTGGTGATATTGGTGCTGATGTTTGTCACTTAAATCTTCATAAGACATTTT 183716 Query 155059 GTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCT 155116 | ||||| || || ||||| |||||||| ||||||||||| ||||| ||| ||||| Sbjct 183715 GCATTCCTCACGGCGGTGGCGGTCCTGGTGTAGGTCCTATTTGTGTAAAAAAGCATCT 183658 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 153246 ATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCT 153305 || ||||| || ||||||||||| ||| ||||| || || ||||| ||||| ||| Sbjct 185597 ATTCAGCGTAATGTTCTTGAGAACCCTGAATGGTATACTCAATATACTCCATATCAGGCT 185538 Query 153306 GAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTT 153365 || || ||||| || | ||||| || | | ||||| ||||| | || | || || Sbjct 185537 GAAATTTCTCAAGGGCGTCTGGAATCTATGATGAATTATCAAACCATGATTGCTGATCTC 185478 Query 153366 ACAGG-ATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGC 153424 ||||| | | || |||| || || | || | ||||||| |||||| || | |||||| Sbjct 185477 ACAGGTCTCAGCATTAGC-AATGCTAGTTTACTGGATGAAGGAACTGCTGCTGGAGAAGC 185419 Query 153425 AATG 153428 |||| Sbjct 185418 AATG 185415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212771039360