Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1 132 6e-26 >seq1 Length=5579133 Score = 132 bits (146), Expect = 6e-26 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 159614 TTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTC 159673 |||| || ||||||||||||| || |||||||||| || | |||||| ||| ||| Sbjct 183835 TTCACGAACATGGTGGTCAGGTTTACTTTGATGGTGCTAACATGAATGCAATGGTTGGTT 183776 Query 159674 TAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCT 159733 || || | |||| |||||| ||||| ||||| |||| | ||||||||||| | Sbjct 183775 TATGCAAGGCTGGTGATATTGGTGCTGATGTTTGTCACTTAAATCTTCATAAGACATTTT 183716 Query 159734 GTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCT 159791 | ||||| || || ||||| |||||||| |||||||||||| ||||| ||| ||||| Sbjct 183715 GCATTCCTCACGGCGGTGGCGGTCCTGGTGTAGGTCCTATTTGTGTAAAAAAGCATCT 183658 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 157921 ATACAGCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCT 157980 || ||||| || ||||||||||| ||| ||||| || || ||||| ||||| ||| Sbjct 185597 ATTCAGCGTAATGTTCTTGAGAACCCTGAATGGTATACTCAATATACTCCATATCAGGCT 185538 Query 157981 GAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTC 158040 || || ||||| || | ||||| || | | ||||| ||||| | || | || ||| Sbjct 185537 GAAATTTCTCAAGGGCGTCTGGAATCTATGATGAATTATCAAACCATGATTGCTGATCTC 185478 Query 158041 ACAGGACT-ACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGC 158099 ||||| || | | |||| || || | || | ||||||| |||||| || | |||||| Sbjct 185477 ACAGGTCTCAGCATTAGC-AATGCTAGTTTACTGGATGAAGGAACTGCTGCTGGAGAAGC 185419 Query 158100 AATG 158103 |||| Sbjct 185418 AATG 185415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588051170597440