Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 206 6e-48 seq2 185 2e-41 >seq1 Length=5579133 Score = 206 bits (228), Expect = 6e-48 Identities = 179/221 (81%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| ||||||||||||||||| ||||| || |||||||| | | ||| | ||||| Sbjct 3108668 CAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATC 3108727 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||||||| ||||| ||||| |||||||| || |||||||| ||||||||||| Sbjct 3108728 TTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTC 3108787 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| ||||| |||||| || ||||| ||||| || ||||| |||||||||| ||| Sbjct 3108788 TTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGT 3108847 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTT 195148 ||| || || | ||||| ||||| | |||||||| ||||| Sbjct 3108848 CTTACCCGTAAGGGTTTTGACGAAAATTTGCATTT-TGGTT 3108887 Score = 178 bits (196), Expect = 3e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| |||||||| ||||| || | |||||| | ||||| || | ||| Sbjct 3969211 TGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCCTCTAATTGC 3969152 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||||||||| ||||||||||| |||||||| ||||| |||||||| ||||| Sbjct 3969151 TTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGGATTTTG 3969092 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || ||||| ||||| || ||||| |||||||| | |||||||| ||| Sbjct 3969091 CTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTTCCGGTC 3969032 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | ||||| Sbjct 3969031 AAAGTCTTGACGAAAATCTGCAT 3969009 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||||||||||||||| ||||||||||| | |||||| | ||||| || Sbjct 2794515 AACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTC 2794574 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| || || || || | ||||||||| || |||||||| ||||| ||||| || Sbjct 2794575 CAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTG 2794634 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| || ||||| ||||| || |||||| || ||||| | || || Sbjct 2794635 AATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTT 2794694 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || || || | ||||| Sbjct 2794695 ACCAGTCAAAGTCTTGACAAAAATCTGCAT 2794724 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| ||||||||||||||||| ||||| || || ||||| | | ||| | || || Sbjct 3238150 CAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCGTC 3238209 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||||| ||||| || || ||||| | |||||||| || |||||||| ||||| || || Sbjct 3238210 CTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTATC 3238269 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| ||||| |||||| || ||||| ||||| || ||| || |||||||||| || Sbjct 3238270 TTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATGGT 3238329 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | |||||||| || | ||||| Sbjct 3238330 CTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 >seq2 Length=4539804 Score = 185 bits (204), Expect = 2e-41 Identities = 167/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||| ||||| |||||||| |||||||| | |||||| | |||||||| Sbjct 1044445 AACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTC 1044504 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| || || ||||| |||||||| || |||||||||||||| || || || Sbjct 1044505 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1044564 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| ||||||||||| ||| || ||||| | |||| || || Sbjct 1044565 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1044624 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| || || | |||||| Sbjct 1044625 ACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||| ||||| |||||||| |||||||| | |||||| | || ||||| Sbjct 1044901 AACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTC 1044960 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| || || ||||| |||||||| || |||||||||||||| || || || Sbjct 1044961 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1045020 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| ||||||||||| ||| || ||||| | |||| || || Sbjct 1045021 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1045080 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| || || | |||||| Sbjct 1045081 ACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||| ||||| |||||||| |||||||| | |||||| | |||||||| Sbjct 1045357 AACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTC 1045416 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| || || ||||| |||||||| || |||||||||||||| || || || Sbjct 1045417 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1045476 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| || || |||||||| || ||| ||| ||||| | |||| ||||| Sbjct 1045477 AATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAATAGTCTT 1045536 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || ||||| | ||||| Sbjct 1045537 TCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566 Score = 176 bits (194), Expect = 1e-38 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || ||||| ||||| |||||||| |||||||| | |||||| | |||||||| Sbjct 1045129 AACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTC 1045188 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| || || ||||| |||||||| || |||||||||||||| || || || Sbjct 1045189 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1045248 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| ||||||||||| ||| || ||||| | |||| || || Sbjct 1045249 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1045308 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| || || | |||||| Sbjct 1045309 ACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || ||||| ||||| |||||||| |||||||| | |||||| | || ||||| Sbjct 1044673 AACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTC 1044732 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| || || ||||| |||||||| || |||||||||||||| || || || Sbjct 1044733 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1044792 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| ||||||||||| ||| || ||||| | |||| || || Sbjct 1044793 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1044852 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| || || | |||||| Sbjct 1044853 ACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481543139068