Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq1 206 6e-48
seq2 185 2e-41
>seq1
Length=5579133
Score = 206 bits (228), Expect = 6e-48
Identities = 179/221 (81%), Gaps = 1/221 (0%)
Strand=Plus/Plus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
|||||| ||||||||||||||||| ||||| || |||||||| | | ||| | |||||
Sbjct 3108668 CAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATC 3108727
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
||| | ||||||||| ||||| ||||| |||||||| || |||||||| |||||||||||
Sbjct 3108728 TTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTC 3108787
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
||| ||||| |||||| || ||||| ||||| || ||||| |||||||||| |||
Sbjct 3108788 TTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGT 3108847
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTT 195148
||| || || | ||||| ||||| | |||||||| |||||
Sbjct 3108848 CTTACCCGTAAGGGTTTTGACGAAAATTTGCATTT-TGGTT 3108887
Score = 178 bits (196), Expect = 3e-39
Identities = 161/203 (79%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
||||| || ||||| |||||||| ||||| || | |||||| | ||||| || | |||
Sbjct 3969211 TGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCCTCTAATTGC 3969152
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || ||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||
Sbjct 3969151 TTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGGATTTTG 3969092
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|||||| || ||||| ||||| || ||||| |||||||| | |||||||| |||
Sbjct 3969091 CTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTTCCGGTC 3969032
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
||||| || ||||| | |||||
Sbjct 3969031 AAAGTCTTGACGAAAATCTGCAT 3969009
Score = 167 bits (184), Expect = 5e-36
Identities = 163/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||||||||||||||||||||| ||||||||||| | |||||| | ||||| ||
Sbjct 2794515 AACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTC 2794574
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
| |||||| || || || || | ||||||||| || |||||||| ||||| ||||| ||
Sbjct 2794575 CAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTG 2794634
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || |||||| || ||||| ||||| || |||||| || ||||| | || ||
Sbjct 2794635 AATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTT 2794694
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||||||| || || || | |||||
Sbjct 2794695 ACCAGTCAAAGTCTTGACAAAAATCTGCAT 2794724
Score = 159 bits (176), Expect = 8e-34
Identities = 163/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
|||||| ||||||||||||||||| ||||| || || ||||| | | ||| | || ||
Sbjct 3238150 CAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCGTC 3238209
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
||||| ||||| || || ||||| | |||||||| || |||||||| ||||| || ||
Sbjct 3238210 CTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTATC 3238269
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
||| ||||| |||||| || ||||| ||||| || ||| || |||||||||| ||
Sbjct 3238270 TTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATGGT 3238329
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || || | |||||||| || | |||||
Sbjct 3238330 CTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362
>seq2
Length=4539804
Score = 185 bits (204), Expect = 2e-41
Identities = 167/210 (80%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||||||||||||||| ||||| |||||||| |||||||| | |||||| | ||||||||
Sbjct 1044445 AACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTC 1044504
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| |||||||| || || ||||| |||||||| || |||||||||||||| || || ||
Sbjct 1044505 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1044564
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| ||||| ||||||||||| ||| || ||||| | |||| || ||
Sbjct 1044565 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1044624
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| ||||| || || | ||||||
Sbjct 1044625 ACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654
Score = 181 bits (200), Expect = 2e-40
Identities = 166/210 (79%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||||||||||||||| ||||| |||||||| |||||||| | |||||| | || |||||
Sbjct 1044901 AACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTC 1044960
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| |||||||| || || ||||| |||||||| || |||||||||||||| || || ||
Sbjct 1044961 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1045020
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| ||||| ||||||||||| ||| || ||||| | |||| || ||
Sbjct 1045021 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1045080
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| ||||| || || | ||||||
Sbjct 1045081 ACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110
Score = 181 bits (200), Expect = 2e-40
Identities = 166/210 (79%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||||||||||||||| ||||| |||||||| |||||||| | |||||| | ||||||||
Sbjct 1045357 AACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTC 1045416
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| |||||||| || || ||||| |||||||| || |||||||||||||| || || ||
Sbjct 1045417 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1045476
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| || || |||||||| || ||| ||| ||||| | |||| |||||
Sbjct 1045477 AATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAATAGTCTT 1045536
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || || || || ||||| | |||||
Sbjct 1045537 TCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566
Score = 176 bits (194), Expect = 1e-38
Identities = 165/210 (79%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
|||||| || ||||| ||||| |||||||| |||||||| | |||||| | ||||||||
Sbjct 1045129 AACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTC 1045188
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| |||||||| || || ||||| |||||||| || |||||||||||||| || || ||
Sbjct 1045189 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1045248
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| ||||| ||||||||||| ||| || ||||| | |||| || ||
Sbjct 1045249 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1045308
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| ||||| || || | ||||||
Sbjct 1045309 ACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338
Score = 172 bits (190), Expect = 1e-37
Identities = 164/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
|||||| || ||||| ||||| |||||||| |||||||| | |||||| | || |||||
Sbjct 1044673 AACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTC 1044732
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| |||||||| || || ||||| |||||||| || |||||||||||||| || || ||
Sbjct 1044733 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1044792
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| ||||| ||||||||||| ||| || ||||| | |||| || ||
Sbjct 1044793 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1044852
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| ||||| || || | ||||||
Sbjct 1044853 ACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481543139068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |