Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 215 6e-51 seq1 199 4e-46 >seq2 Length=4539804 Score = 215 bits (238), Expect = 6e-51 Identities = 586/886 (66%), Gaps = 21/886 (2%) Strand=Plus/Minus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||| || || | |||| | |||||||||||||| |||||||| |||| || ||| | Sbjct 3722856 TTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCT 3722797 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATA-TAttttt--ttGAATCCTAATTCTAATA 18787 |||| ||||| || ||||| |||| ||||| || || | ||| || || | | | Sbjct 3722796 CCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG---CCCAAAGCAACCA 3722740 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 | | ||| || ||||||| |||||| ||||| ||| |||||| || | | Sbjct 3722739 ACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTATTCATACCAAGCA 3722680 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 |||| || || || || || | |||||| || |||| || || || |||| Sbjct 3722679 GACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAA 3722620 Query 18908 TAGATACAACT--CTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965 | | | |||| || | | | || || | ||| ||||||||||||| || Sbjct 3722619 TGGCTTCAACAACCTTGCGGCCT--GGTCTGTGCTTCAAATGACTAAACATCAAACAGGC 3722562 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||| || || || ||||| || | || ||||||||||| ||||| || | |||||| Sbjct 3722561 AAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGG 3722502 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||| ||||| | ||| || | ||| || ||||| ||||| |||||||||||||| ||||| Sbjct 3722501 CATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACC 3722442 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 |||||| || ||||| ||||| | | | |||| | | ||| | || || |||||| Sbjct 3722441 TTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTTCATCATTAATCCA 3722382 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 || ||||| | || || || | | | |||||| |||| || || | Sbjct 3722381 ACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAATAGCATCGAAATG 3722322 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAA--TAAACT--GTACATTT 19261 | | | | || || || || ||| || |||||| ||| | ||| | | Sbjct 3722321 ACGC---TGTTTTTCCTTA-GGTTCACGAATGTATGTATCAAGCAAAAGTGAGTAGGTCT 3722266 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 | || ||||||||||| || || || || || |||| ||| | ||||| | |||| Sbjct 3722265 CAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTTCAGGGATCT 3722206 Query 19322 GTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381 | |||||| | || | |||| | ||| |||||||| || ||||| || || | Sbjct 3722205 GAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCTGACGCAGCGA 3722146 Query 19382 AAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA--TG-TATTCCAAT 19438 || | || | |||| |||||| | |||||| | |||| || ||| ||||| Sbjct 3722145 AATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAACTTGTTATCCCAAT 3722086 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 || | ||||| || | ||| | ||| ||| | ||||||||||| || || || || | Sbjct 3722085 CAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTTCAGCCTTCT 3722026 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | || | | ||| || || |||| | || ||||| | |||||| Sbjct 3722025 TGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980 >seq1 Length=5579133 Score = 199 bits (220), Expect = 4e-46 Identities = 336/484 (69%), Gaps = 2/484 (0%) Strand=Plus/Minus Query 48264 TCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGT 48323 || || |||||| | || || |||||| | ||||||||| | ||| |||||||| || Sbjct 4228262 TCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAGGC 4228203 Query 48324 TCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCA 48383 || ||||| ||| | |||| || || |||||||||||||| || | ||| | || Sbjct 4228202 TCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAGCT 4228143 Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAA 48443 || ||||| ||||| | | ||| |||||||| || || || ||||||| ||||| | | Sbjct 4228142 GTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAGTTCCAGCA 4228083 Query 48444 ATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTA 48503 ||||| || | ||||| || || ||| |||||| ||||| || || | || Sbjct 4228082 ATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCTTG 4228023 Query 48504 GATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATA 48563 || || | ||||||| || || || || || |||||||| ||| || ||| |||| Sbjct 4228022 GAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCATC 4227963 Query 48564 TTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGA 48623 | | || |||||| ||| | ||| ||| || ||| || | ||| || | ||||| Sbjct 4227962 GTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTGGT 4227903 Query 48624 GATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATA 48683 || ||||| |||| | | || | ||| || |||||||||||| ||| || || Sbjct 4227902 GAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAGCTTCAATG 4227843 Query 48684 TCC-CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 ||| || | || ||||| | | |||||||| | ||||| ||||| | ||| ||| Sbjct 4227842 TCCTCACCG-TGGATACCAACGGCGACACGCATAATCATATGCTGAGGGCGCTCAGCAAC 4227784 Query 48743 TTTG 48746 |||| Sbjct 4227783 TTTG 4227780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108771894560