Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq2 215 6e-51
seq1 199 4e-46
>seq2
Length=4539804
Score = 215 bits (238), Expect = 6e-51
Identities = 586/886 (66%), Gaps = 21/886 (2%)
Strand=Plus/Minus
Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730
|||| || || | |||| | |||||||||||||| |||||||| |||| || ||| |
Sbjct 3722856 TTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCT 3722797
Query 18731 CCATAAAATCAAATGGATTTTTTACATTATA-TAttttt--ttGAATCCTAATTCTAATA 18787
|||| ||||| || ||||| |||| ||||| || || | ||| || || | | |
Sbjct 3722796 CCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG---CCCAAAGCAACCA 3722740
Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847
| | ||| || ||||||| |||||| ||||| ||| |||||| || | |
Sbjct 3722739 ACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTATTCATACCAAGCA 3722680
Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907
|||| || || || || || | |||||| || |||| || || || ||||
Sbjct 3722679 GACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAA 3722620
Query 18908 TAGATACAACT--CTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965
| | | |||| || | | | || || | ||| ||||||||||||| ||
Sbjct 3722619 TGGCTTCAACAACCTTGCGGCCT--GGTCTGTGCTTCAAATGACTAAACATCAAACAGGC 3722562
Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025
||| || || || ||||| || | || ||||||||||| ||||| || | ||||||
Sbjct 3722561 AAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGG 3722502
Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085
||| ||||| | ||| || | ||| || ||||| ||||| |||||||||||||| |||||
Sbjct 3722501 CATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACC 3722442
Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145
|||||| || ||||| ||||| | | | |||| | | ||| | || || ||||||
Sbjct 3722441 TTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTTCATCATTAATCCA 3722382
Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205
|| ||||| | || || || | | | |||||| |||| || || |
Sbjct 3722381 ACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAATAGCATCGAAATG 3722322
Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAA--TAAACT--GTACATTT 19261
| | | | || || || || ||| || |||||| ||| | ||| | |
Sbjct 3722321 ACGC---TGTTTTTCCTTA-GGTTCACGAATGTATGTATCAAGCAAAAGTGAGTAGGTCT 3722266
Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321
| || ||||||||||| || || || || || |||| ||| | ||||| | ||||
Sbjct 3722265 CAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTTCAGGGATCT 3722206
Query 19322 GTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381
| |||||| | || | |||| | ||| |||||||| || ||||| || || |
Sbjct 3722205 GAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCTGACGCAGCGA 3722146
Query 19382 AAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA--TG-TATTCCAAT 19438
|| | || | |||| |||||| | |||||| | |||| || ||| |||||
Sbjct 3722145 AATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAACTTGTTATCCCAAT 3722086
Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498
|| | ||||| || | ||| | ||| ||| | ||||||||||| || || || || |
Sbjct 3722085 CAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTTCAGCCTTCT 3722026
Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
| || | | ||| || || |||| | || ||||| | ||||||
Sbjct 3722025 TGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980
>seq1
Length=5579133
Score = 199 bits (220), Expect = 4e-46
Identities = 336/484 (69%), Gaps = 2/484 (0%)
Strand=Plus/Minus
Query 48264 TCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGT 48323
|| || |||||| | || || |||||| | ||||||||| | ||| |||||||| ||
Sbjct 4228262 TCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAGGC 4228203
Query 48324 TCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCA 48383
|| ||||| ||| | |||| || || |||||||||||||| || | ||| | ||
Sbjct 4228202 TCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAGCT 4228143
Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAA 48443
|| ||||| ||||| | | ||| |||||||| || || || ||||||| ||||| | |
Sbjct 4228142 GTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAGTTCCAGCA 4228083
Query 48444 ATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTA 48503
||||| || | ||||| || || ||| |||||| ||||| || || | ||
Sbjct 4228082 ATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCTTG 4228023
Query 48504 GATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATA 48563
|| || | ||||||| || || || || || |||||||| ||| || ||| ||||
Sbjct 4228022 GAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCATC 4227963
Query 48564 TTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGA 48623
| | || |||||| ||| | ||| ||| || ||| || | ||| || | |||||
Sbjct 4227962 GTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTGGT 4227903
Query 48624 GATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATA 48683
|| ||||| |||| | | || | ||| || |||||||||||| ||| || ||
Sbjct 4227902 GAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAGCTTCAATG 4227843
Query 48684 TCC-CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742
||| || | || ||||| | | |||||||| | ||||| ||||| | ||| |||
Sbjct 4227842 TCCTCACCG-TGGATACCAACGGCGACACGCATAATCATATGCTGAGGGCGCTCAGCAAC 4227784
Query 48743 TTTG 48746
||||
Sbjct 4227783 TTTG 4227780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108771894560
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