Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1 154 1e-32 seq2 129 5e-25 >seq1 Length=5579133 Score = 154 bits (170), Expect = 1e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | |||||||||||||||||| || ||||| || ||||| || | | ||| | | | Sbjct 3969224 ACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCC 3969165 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || |||||||| || || || || | ||| ||||| || || ||||| ||||| || Sbjct 3969164 ATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTT 3969105 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| || ||| | || | ||||||||| | ||||| ||||| |||| Sbjct 3969104 GTCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGAT 3969045 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || || ||||| ||||| || || || ||||||||| || Sbjct 3969044 AGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCATGATT 3969005 Score = 150 bits (166), Expect = 1e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || ||||| || || |||||||| ||||||||||| | | ||| | | Sbjct 2794509 ACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACC 2794568 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| ||||| || ||||| ||||| || |||||||| || ||||| ||||| || Sbjct 2794569 ATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTT 2794628 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || || ||| | || | ||||||||| | |||||| || || || | Sbjct 2794629 GTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTAT 2794688 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || ||||| || ||||| |||||||| Sbjct 2794689 AGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCAT 2794724 Score = 138 bits (152), Expect = 9e-28 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| ||||| | ||||| || || || ||||| || || ||||| | | ||| | | Sbjct 3238147 ACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCC 3238206 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | |||||| || ||||| |||||||| |||||||| || ||||| ||||| || Sbjct 3238207 GTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTT 3238266 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| ||||| || ||| | || | ||||||||| | ||| || ||||| || | Sbjct 3238267 ATCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAAT 3238326 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || || || | ||||||||||| |||||||| || Sbjct 3238327 GGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCATCGT 3238365 >seq2 Length=4539804 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||| ||||| || ||||| || |||||||| | | ||| | | Sbjct 1044439 ACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1044498 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||||||| ||||| || | ||| |||||||| || ||||||||||| || Sbjct 1044499 ATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1044558 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| ||||| || ||||| | || | |||||||| | || ||||| | || | Sbjct 1044559 ATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAAT 1044618 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || ||||| ||||| || ||||| Sbjct 1044619 GGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||| || ||||| || ||||| || |||||||| | | ||| | | Sbjct 1045123 ACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1045182 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||||||| ||||| || | ||| |||||||| || ||||||||||| || Sbjct 1045183 ATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1045242 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| ||||| || ||||| | || | |||||||| | || ||||| | || | Sbjct 1045243 ATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAAT 1045302 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || ||||| ||||| || ||||| Sbjct 1045303 GGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||| ||||| || ||||| || |||||||| | | ||| | | Sbjct 1045351 ACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1045410 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||||||| ||||| || | ||| |||||||| || ||||||||||| || Sbjct 1045411 ATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1045470 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| ||||| || |||||| | || | || || || | ||| ||||| | || | Sbjct 1045471 ATCCTGAATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAAT 1045530 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || || ||||| || || || || ||||||||||| Sbjct 1045531 AGTCTTTCCAGTTAATGTCTTGACGAAAATCTGCATGGT 1045569 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||| || ||||| || ||||| || |||||||| | | ||| | | Sbjct 1044667 ACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1044726 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||||||||| ||||| || | ||| |||||||| || ||||||||||| || Sbjct 1044727 GTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1044786 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| ||||| || ||||| | || | |||||||| | || ||||| | || | Sbjct 1044787 ATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAAT 1044846 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || ||||| ||||| || ||||| Sbjct 1044847 GGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||| ||||| || ||||| || |||||||| | | ||| | | Sbjct 1044895 ACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1044954 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||||||||| ||||| || | ||| |||||||| || ||||||||||| || Sbjct 1044955 GTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1045014 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| ||||| || ||||| | || | |||||||| | || ||||| | || | Sbjct 1045015 ATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAAT 1045074 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || ||||| ||||| || ||||| Sbjct 1045075 GGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278380681428