Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq1 154 1e-32
seq2 129 5e-25
>seq1
Length=5579133
Score = 154 bits (170), Expect = 1e-32
Identities = 166/220 (75%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | |||||||||||||||||| || ||||| || ||||| || | | ||| | | |
Sbjct 3969224 ACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCC 3969165
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| || |||||||| || || || || | ||| ||||| || || ||||| ||||| ||
Sbjct 3969164 ATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTT 3969105
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
||||| ||||| || ||| | || | ||||||||| | ||||| ||||| ||||
Sbjct 3969104 GTCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGAT 3969045
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473
|| || ||||| ||||| || || || ||||||||| ||
Sbjct 3969044 AGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCATGATT 3969005
Score = 150 bits (166), Expect = 1e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| || ||||| || || |||||||| ||||||||||| | | ||| | |
Sbjct 2794509 ACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACC 2794568
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| ||||| ||||| || ||||| ||||| || |||||||| || ||||| ||||| ||
Sbjct 2794569 ATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTT 2794628
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| ||||| || || ||| | || | ||||||||| | |||||| || || || |
Sbjct 2794629 GTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTAT 2794688
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| || || ||||| || ||||| ||||||||
Sbjct 2794689 AGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCAT 2794724
Score = 138 bits (152), Expect = 9e-28
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| ||||| | ||||| || || || ||||| || || ||||| | | ||| | |
Sbjct 3238147 ACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCC 3238206
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
|| || | |||||| || ||||| |||||||| |||||||| || ||||| ||||| ||
Sbjct 3238207 GTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTT 3238266
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|||||| ||||| || ||| | || | ||||||||| | ||| || ||||| || |
Sbjct 3238267 ATCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAAT 3238326
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472
|| || || || | ||||||||||| |||||||| ||
Sbjct 3238327 GGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCATCGT 3238365
>seq2
Length=4539804
Score = 129 bits (142), Expect = 5e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | ||||| ||||| || ||||| || |||||||| | | ||| | |
Sbjct 1044439 ACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1044498
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| || | ||||||||| ||||| || | ||| |||||||| || ||||||||||| ||
Sbjct 1044499 ATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1044558
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
||| ||||| || ||||| | || | |||||||| | || ||||| | || |
Sbjct 1044559 ATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAAT 1044618
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| || || || ||||| ||||| || |||||
Sbjct 1044619 GGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654
Score = 129 bits (142), Expect = 5e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | ||| || ||||| || ||||| || |||||||| | | ||| | |
Sbjct 1045123 ACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1045182
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| || | ||||||||| ||||| || | ||| |||||||| || ||||||||||| ||
Sbjct 1045183 ATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1045242
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
||| ||||| || ||||| | || | |||||||| | || ||||| | || |
Sbjct 1045243 ATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAAT 1045302
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| || || || ||||| ||||| || |||||
Sbjct 1045303 GGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338
Score = 129 bits (142), Expect = 5e-25
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | ||||| ||||| || ||||| || |||||||| | | ||| | |
Sbjct 1045351 ACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1045410
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| || | ||||||||| ||||| || | ||| |||||||| || ||||||||||| ||
Sbjct 1045411 ATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1045470
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
||| ||||| || |||||| | || | || || || | ||| ||||| | || |
Sbjct 1045471 ATCCTGAATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAAT 1045530
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472
|| || || ||||| || || || || |||||||||||
Sbjct 1045531 AGTCTTTCCAGTTAATGTCTTGACGAAAATCTGCATGGT 1045569
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | ||| || ||||| || ||||| || |||||||| | | ||| | |
Sbjct 1044667 ACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1044726
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
|| || | ||||||||| ||||| || | ||| |||||||| || ||||||||||| ||
Sbjct 1044727 GTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1044786
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
||| ||||| || ||||| | || | |||||||| | || ||||| | || |
Sbjct 1044787 ATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAAT 1044846
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| || || || ||||| ||||| || |||||
Sbjct 1044847 GGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | ||||| ||||| || ||||| || |||||||| | | ||| | |
Sbjct 1044895 ACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1044954
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
|| || | ||||||||| ||||| || | ||| |||||||| || ||||||||||| ||
Sbjct 1044955 GTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1045014
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
||| ||||| || ||||| | || | |||||||| | || ||||| | || |
Sbjct 1045015 ATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAAT 1045074
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| || || || ||||| ||||| || |||||
Sbjct 1045075 GGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396278380681428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |