Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1 149 5e-31
seq2 95.1 9e-15
>seq1
Length=5579133
Score = 149 bits (164), Expect = 5e-31
Identities = 159/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || ||| ||||||||| |||||||||||||| ||| | ||| | || |||
Sbjct 2794516 ACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCC 2794575
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
|||||||| |||||||| |||| ||| |||||||| | |||| || |||||||| |
Sbjct 2794576 AACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGA 2794635
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | || || || | |||||||| | || || |||||
Sbjct 2794636 ATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTA 2794695
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| |||||||| || |||||||||||||||
Sbjct 2794696 CCAGTCAAAGTCTTGACAAAAATCTGCATC 2794725
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| || | || || ||| ||| ||||| || ||||||||||| | | | ||
Sbjct 3108663 AGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGT 3108722
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || ||||||||||| || || || || || |||||||| | |||| || ||
Sbjct 3108723 CCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCT 3108782
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| || || || ||| | | | || || || | ||||||||| | |||
Sbjct 3108783 TTGTCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTA 3108842
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || ||||| | ||||| || ||||| |||||
Sbjct 3108843 ATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCAT 3108880
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|| ||||| || || ||| |||||||| ||||| ||||| ||| | || | || ||
Sbjct 3969217 ACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCCTCT 3969158
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
|| ||||| || || || || || || ||||| || | |||| || ||||||||
Sbjct 3969157 AATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGG 3969098
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|| || || ||| | | || || || | ||||||||| | || || || |||
Sbjct 3969097 ATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTT 3969038
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||||||| || || |||||||||||
Sbjct 3969037 CCGGTCAAAGTCTTGACGAAAATCTGCAT 3969009
Score = 87.8 bits (96), Expect = 1e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||| || | || || ||| ||| ||||| || || |||||||| | | | ||
Sbjct 3238145 AGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGT 3238204
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||||| || ||||| |||| || |||||||| | |||| || |||
Sbjct 3238205 CCGTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCC 3238264
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || || || || ||| | | || || || | || ||||| | |||
Sbjct 3238265 TTATCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTA 3238324
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769
|| || || ||||| | ||||||||||| |||||||||||
Sbjct 3238325 ATGGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCATCGT 3238365
>seq2
Length=4539804
Score = 95.1 bits (104), Expect = 9e-15
Identities = 138/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| |||||||| |||||||| || ||| | || | || || | |||||||| |||||
Sbjct 1045375 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAA 1045434
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || || |||||||| | |||| ||| ||||| || |||||| ||||||
Sbjct 1045435 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACATT 1045494
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || | || || |||| ||||| || ||||| || || || || ||
Sbjct 1045495 GTCAATGGTATCGGAAGATTCAACTTCCAATGTAATAGTCTTTCCAGTTAATGTCTTGAC 1045554
Query 48755 AAAAATCTGCATCGT 48769
||||||||||| ||
Sbjct 1045555 GAAAATCTGCATGGT 1045569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380937581429292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |