Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 1e-11 >seq1 Length=5579133 Score = 86.0 bits (94), Expect = 1e-11 Identities = 179/258 (69%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 221406 CGCAAGACTGCGTCA-GGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTC 221464 ||||||| || ||| |||| |||||||| || || || ||||| |||| || || Sbjct 4228927 CGCAAGAG-GCCTCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTC 4228869 Query 221465 TTGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCT 221522 ||||| | | ||| ||| || | ||| || | | ||||| | ||||| || || | Sbjct 4228868 TTGGCACCTGCAGATTCGAATGGTAAACGAAG-AGCGAAGAAAG-CATCGGCAAGACCTT 4228811 Query 221523 GTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGA 221581 | || || | ||| | ||| | || | | | ||| | |||| ||||| || || ||| Sbjct 4228810 GAACACCCAAACCAACGGGACGATGGCGCATATTGCTA-CGGCGAGCTTCAGGAACAGGA 4228752 Query 221582 TAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTC 221641 ||| |||| |||||||| | ||||||||||| |||| | ||| || || || ||| Sbjct 4228751 TAATAGTTAACGTCGATAATCTTGTTGAGGTTACGAGTAACGACCTTCACGACATCGTGA 4228692 Query 221642 AGCTTCTGGTGATTGAAC 221659 ||||| ||| |||| || Sbjct 4228691 AGCTTTTGGAAATTGTAC 4228674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844753557760