Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 4e-11 >seq1 Length=5579133 Score = 82.4 bits (90), Expect = 4e-11 Identities = 302/463 (65%), Gaps = 10/463 (2%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| || || |||||||||| ||||| || | || | || | | || || || Sbjct 4228314 CATAAACAAGTCAGGAATCCACAAGGCATAGAACATTTCGCGTGCGCGGAAATCCTCGTT 4228255 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || ||| ||||| || ||||| || || | || ||| | ||||| || || ||||| Sbjct 4228254 GCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAGGCTCCAAATA 4228195 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 | ||||| ||| | || || ||||| || || || | || || | || Sbjct 4228194 GGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAGCTGTGTTGTT 4228135 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCTTGG 26171 | |||| | ||| || || | ||| |||| || | || || || | | ||| | | Sbjct 4228134 GTAAACACGAATCATGGGGACAATTCC-GTTGGAAGTACCATTAGTTCCAGCAATATACG 4228076 Query 26172 ATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAG 26231 | || || | |||||| | |||| || |||||| || || ||||| || || || Sbjct 4228075 AACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCTTGGAGATCA 4228016 Query 26232 CTGCACA-ATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAAT 26290 ||||| |||| | ||| ||| | ||||||| || || ||||||| | ||| Sbjct 4228015 TAGCACACATCTTGAG-TGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCAT-CGTAAC 4227958 Query 26291 AAA-AAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGC 26349 | ||||||||||| | ||| | | ||| || || | ||| || | || |||| ||| Sbjct 4227957 GAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTGGTGAAGC 4227898 Query 26350 ATGAGTATAATATCCTTCACTCA--AAGCTGTATAAGTTTCAA 26390 ||| ||| | || | || | || || ||||| ||||||| Sbjct 4227897 ATGGGTAAAGTAGCGTTGAGACATCAAATTGTAT--GTTTCAA 4227857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039987664300