Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq1 82.4 4e-11
>seq1
Length=5579133
Score = 82.4 bits (90), Expect = 4e-11
Identities = 302/463 (65%), Gaps = 10/463 (2%)
Strand=Plus/Minus
Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992
|||||| || || |||||||||| ||||| || | || | || | | || || ||
Sbjct 4228314 CATAAACAAGTCAGGAATCCACAAGGCATAGAACATTTCGCGTGCGCGGAAATCCTCGTT 4228255
Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052
|| ||| ||||| || ||||| || || | || ||| | ||||| || || |||||
Sbjct 4228254 GCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAGGCTCCAAATA 4228195
Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112
| ||||| ||| | || || ||||| || || || | || || | ||
Sbjct 4228194 GGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAGCTGTGTTGTT 4228135
Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAAT-CCGTTTGTGCTATGAATCTTGG 26171
| |||| | ||| || || | ||| |||| || | || || || | | ||| | |
Sbjct 4228134 GTAAACACGAATCATGGGGACAATTCC-GTTGGAAGTACCATTAGTTCCAGCAATATACG 4228076
Query 26172 ATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAG 26231
| || || | |||||| | |||| || |||||| || || ||||| || || ||
Sbjct 4228075 AACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCTTGGAGATCA 4228016
Query 26232 CTGCACA-ATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAAT 26290
||||| |||| | ||| ||| | ||||||| || || ||||||| | |||
Sbjct 4228015 TAGCACACATCTTGAG-TGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCAT-CGTAAC 4227958
Query 26291 AAA-AAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGC 26349
| ||||||||||| | ||| | | ||| || || | ||| || | || |||| |||
Sbjct 4227957 GAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTGGTGAAGC 4227898
Query 26350 ATGAGTATAATATCCTTCACTCA--AAGCTGTATAAGTTTCAA 26390
||| ||| | || | || | || || ||||| |||||||
Sbjct 4227897 ATGGGTAAAGTAGCGTTGAGACATCAAATTGTAT--GTTTCAA 4227857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253039987664300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |