Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1 132 6e-26 >seq1 Length=5579133 Score = 132 bits (146), Expect = 6e-26 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 138171 AGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAG 138230 ||||| ||| ||||| |||||||||||| |||||||| ||||| || || ||||| || Sbjct 183658 AGATGCTTTTTTACACAAATAGGACCTACACCAGGACCGCCACCGCCGTGAGGAATGCAA 183717 Query 138231 AATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGA 138290 ||||||||||| | ||||| ||||| ||||| |||||| |||| | || || | Sbjct 183718 AATGTCTTATGAAGATTTAAGTGACAAACATCAGCACCAATATCACCAGCCTTGCATAAA 183777 Query 138291 CCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAA 138348 || ||| |||||| | || |||||||| | || ||||||||||||| || |||| Sbjct 183778 CCAACCATTGCATTCATGTTAGCACCATCAAAGTAAACCTGACCACCATGTTCGTGAA 183835 Score = 82.4 bits (90), Expect = 9e-11 Identities = 130/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAAT-C 139917 |||||| ||| | || |||||| ||||||| | || | || || |||| || | | | Sbjct 185415 CATTGCTTCTCCAGCAGCAGTTCCTTCATCCAGTAAACTAGCATT-GCTAATGCTGAGAC 185473 Query 139918 CTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATA 139977 |||| || || | || | ||||| ||||| | | || ||||| | || ||||| | Sbjct 185474 CTGTGAGATCAGCAATCATGGTTTGATAATTCATCATAGATTCCAGACGCCCTTGAGAAA 185533 Query 139978 TCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCT 140037 | ||||| ||||| ||||| || || ||||| ||| ||||||||||| || |||| Sbjct 185534 TTTCAGCCTGATATGGAGTATATTGAGTATACCATTCAGGGTTCTCAAGAACATTACGCT 185593 Query 140038 GTAT 140041 | || Sbjct 185594 GAAT 185597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998371050080