Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 172 7e-38 seq2 82.4 9e-11 >seq1 Length=5579133 Score = 172 bits (190), Expect = 7e-38 Identities = 885/1395 (63%), Gaps = 35/1395 (3%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| | ||| | ||||| ||||| | || |||||||| || |||||||| ||| Sbjct 4227795 CCCTCAGCATATGATTATGCGTGTCGCCGTTGGTATCCACGGTGAGGACATTGAAGCTGC 4227854 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | || |||||| | |||||| ||| | || | || || ||||||| || || Sbjct 4227855 TATTGAAACATACAATTTGATGTCTCAACGCTACTTTACCCATGCTTCACCAACTCTTTT 4227914 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 |||||| ||||| || | || || | || ||| ||||| | | | || || || Sbjct 4227915 CAATGCCGGTACTCCTCGTCCCCAACTCTCTTCTTGTTTCCTCGTTACGATGAAAGACGA 4227974 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | || ||||| | || || | | |||||| ||||| ||| ||||| Sbjct 4227975 CTCTATTGAAGGAATCTACGACACACTCAAGATGTGTGCTATGATCTCCAAGACCGCTGG 4228034 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 |||||||| || | || || | | ||||| | || |||| || || || Sbjct 4228035 CGGTATTGGTATTAATATTCACAACATTAGAGCAACCGGTTCGTATATTGCTGGAACTAA 4228094 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 |||| || | || ||| | || ||| |||| || | ||| |||||| || ||||| Sbjct 4228095 TGGTACTTCCAACGGAATTGTCCCCATGATTCGTGTTTACAACAACACAGCTCGTTATGT 4228154 Query 75571 AAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624 | |||| || ||||| || || | || | ||| ||||| || ||||| Sbjct 4228155 TGACCAAGGAGGTAATAAGCGTCCT---GGTGCCTTTGCAGCCTATTTGGAGCCTTGGCA 4228211 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 ||||||| | ||||| || | || | ||| | || || |||| || || | | Sbjct 4228212 TGCCGATGTTATGGACTTTTTAGAACTTCGAAAGACTCATGGCAACGAGGA-TTTCCGCG 4228270 Query 75685 TA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA--GGA 75741 | | || | || | || |||||||||| ||| | || ||| | || ||||| | | Sbjct 4228271 CACGCGAAATGTTCTATGCCTTGTGGATTCCTGACTTGTTTATGCAACGTGTTGAACGTA 4228330 Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGG 75801 | | |||||| | | ||||| || | |||| |||||| | | || | ||| Sbjct 4228331 ACGAG--CAATGGACCTTCTTCTGCCCCAATGAGGCTCCAGGTTTGGCAGATGTTTGGGG 4228388 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 ||| ||||||| ||||||||| ||||||||| ||||| | | | | | Sbjct 4228389 TGACGAGTTTGTTGCCCTCTACGAAAAGTATGAGAAGGAGAACCGTGGTCGTCGTTCATT 4228448 Query 75862 ACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATA 75921 ||| || | |||||| | || ||||| ||||||| || ||||| | || | Sbjct 4228449 ACCTGCTCAAAAAGTTTGGTACGCCATTCTTCAATCACAAGTTGAAACTGGTAATCCTTT 4228508 Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981 ||| | || |||||| | || ||| ||| || || |||||| | || || || Sbjct 4228509 CATGTTGTATAAGGATTCATGCAACCGTAAGTCCAATCAGAAGAATGTTGGTACTATTCG 4228568 Query 75982 GAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041 ||||||| || || || || ||| | || ||| | | || || |||||||| Sbjct 4228569 CTGCTCAAACCTGTGTACTGAGATTGTTGAATACTCTTCTCCTGACGAAGTTGCTGTTTG 4228628 Query 76042 CAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTA 76101 || | || ||| | || | || | | | | || |||| | | | ||| Sbjct 4228629 TAACCTTGCTTCAGTTGCTTTGCCCACATTTATTAA-----AGAC-GGAAAGTACAATTT 4228682 Query 76102 TGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAG 76161 |||| ||||| || || ||| | ||||| || || ||| | || ||| Sbjct 4228683 CCAAAAGCTTCACGATGTCGTGAAGGTCGTTACTCGTAACCTCAACAAGATTATCGACGT 4228742 Query 76162 AAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGG 76218 || | |||||| || ||| || ||| || |||||||| || | || |||| Sbjct 4228743 TAACTATTATCCTGTTCCTGAAGCT-CGCCGTAG--CAATATGCGCCATCGTCCCGTTGG 4228799 Query 76219 TTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT--TTGTGCCGCTACGCATTTGATTCA 76276 |||||||||||||||||| || |||| ||| || | | | ||| |||| || || Sbjct 4228800 TTTGGGTGTTCAAGGTCTTGCCGATG-CTTTCTTCGCTCTTCGTTTAC-CATTCGAATCT 4228857 Query 76277 GATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAG 76336 | | |||||| || | || | ||||| ||||| || || |||||| |||| ||| Sbjct 4228858 GCAGGTGCCAAGAAGCTAAACATCCAAATCTTCGAAACAATTTACCACGCAGCCCTTGAG 4228917 Query 76337 GCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCG 76396 || ||| || | || | | | ||| | ||||||| | ||| || ||||| || Sbjct 4228918 GCCTCTTGCGAGATTGCCCAGGTAGAGGGTACATATGAGAGTTATGAAGGATCTCCTGCA 4228977 Query 76397 TCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCAACTACGACT 76454 ||||| || | | |||| ||| |||| |||| || || || | | || | || | Sbjct 4228978 TCCCAGGGTATTTTACAGTATGACATGT-GGAACGTTAATCCCACCGATC-TTTGGGATT 4229035 Query 76455 GGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 76514 ||| | | |||||| || | | || ||||||| | | || | |||| Sbjct 4229036 GGGCCGAGTTGAAGGAAAAGATTGCTAAACACGGAATTCGTAATTCTTTGTTAGTAGCAC 4229095 Query 76515 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACA 76574 ||||||| || || || || | |||||| | ||| ||||| || ||||| ||||| | Sbjct 4229096 CAATGCCTACTGCTTCAACATCTCAAATCCTTGGTTTCAATGAGTGTTTTGAGCCATATA 4229155 Query 76575 CAACAAACATCTACC 76589 | | ||||| |||| Sbjct 4229156 CTTCTAACATGTACC 4229170 >seq2 Length=4539804 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGT 65146 |||| ||||| ||| || ||||||||||| || || || || | |||||| |||| Sbjct 3722422 TTGCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTGGATCGTTTGCCTCTATTTTTTGGC 3722481 Query 65147 TGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATG 65206 | ||||| || || || ||||| || || || || |||||| | |||| || |||| Sbjct 3722482 TTAAGAAACGTGGACTTATGCCTGGTCTTACTTTTTCCAATGAATTGATTTGTCGTGATG 3722541 Query 65207 AGGGTCTCCACCAGGAGTTTGCC 65229 ||||||| ||| || |||||| Sbjct 3722542 AGGGTCTTCACACCGACTTTGCC 3722564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569570171520