Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 127 4e-24 seq2 122 2e-22 >seq1 Length=5579133 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || |||| || | || | |||||| ||||| || || Sbjct 2794495 ATACCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCA 2794554 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| || || || |||||||||||||| |||| |||||||||||| Sbjct 2794555 GAAAGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGA 2794614 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || || || || | || | ||| |||||| || || || || Sbjct 2794615 GGAATTCCTTCCTTGTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCC 2794674 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| |||||||||||||| || | || || ||||| || ||||| || Sbjct 2794675 ACCTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCATCTT 2794727 Score = 120 bits (132), Expect = 5e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| ||||| || || || || ||||| | | |||||||||||||| ||||||||||| Sbjct 3108725 ATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTT 3108784 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| |||||| | || | ||| |||||| || || ||||| || || || || || Sbjct 3108785 GTCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAAT 3108844 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || || ||||| || || ||||||||||| Sbjct 3108845 CGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTT 3108883 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| || || ||||| || || | |||||||||||||| |||||||| ||| Sbjct 3238208 TCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTA 3238267 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| |||||| | || | ||| |||||| || || || ||||| || || || || Sbjct 3238268 TCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATG 3238327 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || ||||||||||| || ||||| Sbjct 3238328 GTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 >seq2 Length=4539804 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || | | ||||| || ||||| | |||| ||| || ||| || Sbjct 1045102 AATTTGCATACCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTT 1045161 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || | ||| || | ||| || || |||||||| | | ||||| Sbjct 1045162 GTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTG 1045221 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || ||||| ||||| || || ||| | |||| || ||| || || || Sbjct 1045222 ATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGA 1045281 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||||| | || || |||||||| || | ||||| ||||| |||||||| Sbjct 1045282 AGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 116 bits (128), Expect = 7e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || | | ||||| || ||||| | |||| ||| || ||| || Sbjct 1044646 AATTTGCATACCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTT 1044705 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || | || || | ||| || || |||||||| | | ||||| Sbjct 1044706 GTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTG 1044765 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || ||||| ||||| || || ||| | |||| || ||| || || || Sbjct 1044766 ATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGA 1044825 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||||| | || || |||||||| || | ||||| ||||| |||||||| Sbjct 1044826 AGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 Score = 113 bits (124), Expect = 8e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || || || | |||| ||| || ||| || || || || | || | | Sbjct 1044440 CGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCA 1044499 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| || || |||||||| | | |||||||||||||| || ||||| ||| Sbjct 1044500 TCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTA 1044559 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || ||| | |||| || ||| || || |||||||||||||| | || || Sbjct 1044560 TCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATG 1044619 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || | ||||| ||||| |||||||| Sbjct 1044620 GTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || | | ||||| || || || | |||| ||| || ||| || Sbjct 1044874 AATTTGCATACCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTT 1044933 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || | || || | ||| || || |||||||| | | ||||| Sbjct 1044934 GTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTG 1044993 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || ||||| ||||| || || ||| | |||| || ||| || || || Sbjct 1044994 ATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGA 1045053 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||||| | || || |||||||| || | ||||| ||||| |||||||| Sbjct 1045054 AGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || | | ||||| || || || | |||| ||| || ||| || Sbjct 1045330 AATTTGCATACCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTT 1045389 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || | ||| || | ||| || || |||||||| | | ||||| Sbjct 1045390 GTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTG 1045449 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || ||||| ||||| || || ||| | |||| ||| ||| |||||||| Sbjct 1045450 ATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACATTGTCAATGGTATCGGA 1045509 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| |||||||| | || ||||| || || |||| || || || || || ||||| Sbjct 1045510 AGATTCAACTTCCAATGTAATAGTCTTTCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654355017280