Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq2 122 1e-22
>seq2
Length=4539804
Score = 122 bits (134), Expect = 1e-22
Identities = 151/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | || ||||| |||||||| ||||||||||| ||||| ||| |||
Sbjct 1045566 ATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCC 1045507
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || || | || || || ||||| |||||||| ||||| || |||
Sbjct 1045506 GATACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045447
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | | |||| ||| |||||||| || |||||| | ||| | |||||||| ||
Sbjct 1045446 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045387
Query 156003 ATATCCAAA-GAGGCGACGCTTCA 156025
|| || ||| ||| | || |||||
Sbjct 1045386 AT-TCAAAAGGAGTCTACTCTTCA 1045364
Score = 98.7 bits (108), Expect = 1e-15
Identities = 275/414 (66%), Gaps = 11/414 (3%)
Strand=Plus/Minus
Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938
||||| || || ||||||||||| |||||| | || || || | ||| ||||| ||
Sbjct 3722842 ACTTTCTTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCTCCATGAAATCGAAA 3722783
Query 17939 GGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTATCTGCTACA 17998
||||| || ||||| || || || | || | || || | ||| || |||
Sbjct 3722782 GGATTGGTTACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACAAACGATCAGCAACA 3722723
Query 17999 AATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCA 18058
||||| | ||| || |||||||||| ||||||||| || || || | || |||||
Sbjct 3722722 AATTCAATATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCG 3722663
Query 18059 TCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATG--TTTATTACCCTAG 18116
|| | | |||||||||| || ||||||| || || ||| || | | ||| |
Sbjct 3722662 TCCGTGAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAATGGCTTCAACAACCTTG 3722603
Query 18117 -ATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGT 18175
||| | | | | | ||| || || || ||||| ||||| || |||||
Sbjct 3722602 CGGCCTGG---TCTGTGCTTCAAATGACTA-AACAT--CAAACAGGCAAAGTCGGTGTGA 3722549
Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235
| ||| ||||| | | || ||||| || ||| || | || ||||| | || | |
Sbjct 3722548 AGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCATAAGTCCACGT 3722489
Query 18236 ttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAGAATATACCCTCAAC 18288
|| || |||||||| || || || |||| | | ||||||||| ||||| || ||
Sbjct 3722488 TTCTTAAGCCAAAAAATAGAGGC-AAACGATCCAGAAAAGAAGATACCTTCTAC 3722436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871963406400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |