Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 122 1e-22 >seq2 Length=4539804 Score = 122 bits (134), Expect = 1e-22 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||||| |||||||| ||||||||||| ||||| ||| ||| Sbjct 1045566 ATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCC 1045507 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || | || || || ||||| |||||||| ||||| || ||| Sbjct 1045506 GATACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045447 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| |||||||| || |||||| | ||| | |||||||| || Sbjct 1045446 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045387 Query 156003 ATATCCAAA-GAGGCGACGCTTCA 156025 || || ||| ||| | || ||||| Sbjct 1045386 AT-TCAAAAGGAGTCTACTCTTCA 1045364 Score = 98.7 bits (108), Expect = 1e-15 Identities = 275/414 (66%), Gaps = 11/414 (3%) Strand=Plus/Minus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938 ||||| || || ||||||||||| |||||| | || || || | ||| ||||| || Sbjct 3722842 ACTTTCTTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCTCCATGAAATCGAAA 3722783 Query 17939 GGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTATCTGCTACA 17998 ||||| || ||||| || || || | || | || || | ||| || ||| Sbjct 3722782 GGATTGGTTACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACAAACGATCAGCAACA 3722723 Query 17999 AATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCA 18058 ||||| | ||| || |||||||||| ||||||||| || || || | || ||||| Sbjct 3722722 AATTCAATATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCG 3722663 Query 18059 TCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATG--TTTATTACCCTAG 18116 || | | |||||||||| || ||||||| || || ||| || | | ||| | Sbjct 3722662 TCCGTGAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAATGGCTTCAACAACCTTG 3722603 Query 18117 -ATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGT 18175 ||| | | | | | ||| || || || ||||| ||||| || ||||| Sbjct 3722602 CGGCCTGG---TCTGTGCTTCAAATGACTA-AACAT--CAAACAGGCAAAGTCGGTGTGA 3722549 Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235 | ||| ||||| | | || ||||| || ||| || | || ||||| | || | | Sbjct 3722548 AGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCATAAGTCCACGT 3722489 Query 18236 ttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAGAATATACCCTCAAC 18288 || || |||||||| || || || |||| | | ||||||||| ||||| || || Sbjct 3722488 TTCTTAAGCCAAAAAATAGAGGC-AAACGATCCAGAAAAGAAGATACCTTCTAC 3722436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871963406400