Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1 154 3e-32 seq2 134 3e-26 >seq1 Length=5579133 Score = 154 bits (170), Expect = 3e-32 Identities = 186/252 (74%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 192286 AGTATACTTTTTA-GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGC 192344 ||| | ||||||| | || || |||||| | |||||| || || | || | ||| | Sbjct 3238111 AGTCTTCTTTTTACGCTTCTTACCACCACCACGAAGACGCAAAACGAGGTGAAGAGTGGA 3238170 Query 192345 CTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404 ||| || ||| ||||||||||| || || ||| | || || | ||| || |||||||| Sbjct 3238171 CTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCGTCCTCGAGTTGCTTGCCAGCAAA 3238230 Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 ||| || | ||||||||||| || |||||||| |||||||| ||||| | || ||||| Sbjct 3238231 GATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTATCTTGGATTTTGCTCTTGACATT 3238290 Query 192465 AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524 |||| || || ||||| || || || |||||||| ||||| || | ||||| | Sbjct 3238291 GTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTTAC 3238350 Query 192525 AAATATCTGCAT 192536 ||| |||||||| Sbjct 3238351 AAAGATCTGCAT 3238362 Score = 152 bits (168), Expect = 1e-31 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| |||||||| | |||||| | || || || | ||| | |||||| |||||| || Sbjct 2794491 AATGATACCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTA 2794550 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 |||||| | || || |||| ||||| || || || ||||| || |||| |||||||| Sbjct 2794551 ATCAGAAAGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATC 2794610 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||| || |||||||| || || || || ||| | || ||||| |||| || || || Sbjct 2794611 AGGAGGAATTCCTTCCTTGTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGA 2794670 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || ||||| || || ||||||||||| || || || | ||| |||||||| || Sbjct 2794671 TTCCACCTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCATCTT 2794727 Score = 136 bits (150), Expect = 8e-27 Identities = 184/255 (72%), Gaps = 1/255 (0%) Strand=Plus/Plus Query 192286 AGTATACTTTTTA-GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGC 192344 ||| | ||||||| | || || |||||| | |||||| || || | || | ||| | Sbjct 3108629 AGTCTTCTTTTTACGCTTCTTACCACCACCACGAAGACGCAAAACGAGGTGAAGAGTGGA 3108688 Query 192345 CTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404 ||| || ||| || |||||||| || || ||| |||| || || || |||||||| || Sbjct 3108689 CTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATCTTCTAACTGCTTACCAGCGAA 3108748 Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 || | | ||||||||||| || ||||||||||| ||||| ||||| | || ||||| Sbjct 3108749 AATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTGCTCTTGACATT 3108808 Query 192465 AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524 | |||| || || || || || || || ||||| || ||||| || | ||||| | Sbjct 3108809 ATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGAC 3108868 Query 192525 AAATATCTGCATTTT 192539 || || |||||||| Sbjct 3108869 GAAAATTTGCATTTT 3108883 >seq2 Length=4539804 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | |||||| | || | ||||| ||||| ||| ||| || || || ||||| Sbjct 1045109 ATACCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGA-ATGTTGTAATC 1045167 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || ||| |||| || | ||| ||||||||||| || | | ||||||||||| Sbjct 1045168 TGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGG 1045227 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| ||||| || || || | ||||| ||| || | || || || || Sbjct 1045228 AGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTC 1045287 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||||||||||||| || ||||| | ||| || ||||| Sbjct 1045288 AACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 131 bits (144), Expect = 3e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | |||||| | || | ||||| ||||| ||| ||| || || || ||||| Sbjct 1044653 ATACCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGA-ATGTTGTAATC 1044711 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || ||| | || || | ||| ||||||||||| || | | ||||||||||| Sbjct 1044712 TGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGG 1044771 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| ||||| || || || | ||||| ||| || | || || || || Sbjct 1044772 AGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTC 1044831 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||||||||||||| || ||||| | ||| || ||||| Sbjct 1044832 AACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 Score = 125 bits (138), Expect = 1e-23 Identities = 172/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 192300 TTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATAT 192358 || || || ||| || | |||||| | || | || | ||||| ||| ||| || || | Sbjct 1044418 TTAAAAAAGACCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGA-ATGT 1044476 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | ||||| || | || ||| |||| || | ||| ||||||||||| || | | |||| Sbjct 1044477 TGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTT 1044536 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 ||||||| || || ||||| ||||| || || || | ||||| ||| || | || | Sbjct 1044537 GATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAG 1044596 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || ||||| | ||||||||||||||||| || ||||| | ||| || ||||| Sbjct 1044597 AAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | |||||| | || | || | ||||| ||| ||| || || || ||||| Sbjct 1045337 ATACCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGA-ATGTTGTAATC 1045395 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || ||| |||| || | ||| ||||||||||| || | | ||||||||||| Sbjct 1045396 TGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGG 1045455 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| ||||| || || || | |||||||| || | ||| || ||||| Sbjct 1045456 AGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTC 1045515 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| || || ||||||||||| || | || |||||||| Sbjct 1045516 AACTTCCAATGTAATAGTCTTTCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | |||||| | || | || | ||||| ||| ||| || || || ||||| Sbjct 1044881 ATACCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGA-ATGTTGTAATC 1044939 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || ||| | || || | ||| ||||||||||| || | | ||||||||||| Sbjct 1044940 TGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGG 1044999 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| ||||| || || || | ||||| ||| || | || || || || Sbjct 1045000 AGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTC 1045059 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||||||||||||| || ||||| | ||| || ||||| Sbjct 1045060 AACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 49818 ATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAA 49877 || ||||| ||||| || || || | |||||| || | | | || |||||||| |||| Sbjct 3722572 ATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAA 3722513 Query 49878 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 49937 || | || ||||| | ||| | || ||||||||||| || || ||||| | |||| Sbjct 3722512 GTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAA 3722453 Query 49938 AAGAATATACCCTCGACACACGCAAATGC 49966 ||||| ||||| || ||| ||||| || Sbjct 3722452 AAGAAGATACCTTCTACAGCAGCAAAGGC 3722424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479949545400