Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 136 7e-27 seq1 132 9e-26 >seq2 Length=4539804 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || | ||||| ||||| ||| || ||| || |||||| Sbjct 1044653 ATACCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCT 1044712 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| || | ||| |||||||||||||| | | ||||| ||||| Sbjct 1044713 GAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGA 1044772 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || | ||||| ||| || || || || || || Sbjct 1044773 GGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCA 1044832 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||||||||||||||| || ||||| | || || ||||| Sbjct 1044833 ACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || | ||||| ||||| ||| || ||| || |||||| Sbjct 1045109 ATACCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCT 1045168 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || || | ||| |||||||||||||| | | ||||| ||||| Sbjct 1045169 GAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGA 1045228 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || | ||||| ||| || || || || || || Sbjct 1045229 GGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCA 1045288 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||||||||||||||| || ||||| | || || ||||| Sbjct 1045289 ACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || | || | ||||| ||| || ||| || |||||| Sbjct 1045337 ATACCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCT 1045396 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || || | ||| |||||||||||||| | | ||||| ||||| Sbjct 1045397 GAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGA 1045456 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || | |||||||| || ||||| || ||||| Sbjct 1045457 GGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCA 1045516 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| || || ||||||||||| || | ||| |||||||| Sbjct 1045517 ACTTCCAATGTAATAGTCTTTCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || | || | ||||| ||| || ||| || |||||| Sbjct 1044881 ATACCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCT 1044940 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| || | ||| |||||||||||||| | | ||||| ||||| Sbjct 1044941 GAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGA 1045000 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || | ||||| ||| || || || || || || Sbjct 1045001 GGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCA 1045060 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||||||||||||||| || ||||| | || || ||||| Sbjct 1045061 ACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||| || | ||| || | || | || | ||||| ||| || ||| || ||||| Sbjct 1044424 AAGACCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATC 1044483 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 ||| | || ||| | || || | ||| |||||||||||||| | | ||||| ||||| Sbjct 1044484 TGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGG 1044543 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||| ||||| || || || | ||||| ||| || || || || || || Sbjct 1044544 AGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTC 1044603 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||||||||||||||| || ||||| | || || ||||| Sbjct 1044604 AACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654 Score = 102 bits (112), Expect = 1e-16 Identities = 287/438 (66%), Gaps = 7/438 (2%) Strand=Plus/Minus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 ||||||| ||||||||||| ||||| || || |||||||||||| |||| || || | Sbjct 3722856 TTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCT 3722797 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAATA 38952 ||| ||||| || ||||| | ||||| || || || ||| || || | Sbjct 3722796 CCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACA 3722737 Query 38953 ATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATT 39012 | | ||| || |||||||||| ||| || |||| || || ||||||||| | | Sbjct 3722736 AACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTATTCATACCAAGCAGAC 3722677 Query 39013 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat-- 39070 ||| || | || || | ||||||| || || || ||||||| ||| || Sbjct 3722676 TAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAATGG 3722617 Query 39071 cataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGC 39130 | | | | | || | | | | || | |||| | | | | ||||| || Sbjct 3722616 CTTCA--ACAACCTTGCGGCCTGGTCTGTGCTTCAAATGACT---AAACATCAAACAGGC 3722562 Query 39131 AAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 39190 ||| || || || | ||| || || | | | || |||||||| |||||| | || || Sbjct 3722561 AAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGG 3722502 Query 39191 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 39250 ||| | ||| | || ||||||||||| || || ||||| | ||||||||| ||||| Sbjct 3722501 CATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACC 3722442 Query 39251 CTCCACACACGCAAATGC 39268 || ||| ||||| || Sbjct 3722441 TTCTACAGCAGCAAAGGC 3722424 >seq1 Length=5579133 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | || || || | ||| | |||||| ||||| ||| Sbjct 2794492 ATGATACCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAA 2794551 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | || || | || ||||| || || || |||||||| |||| ||||| ||| Sbjct 2794552 TCAGAAAGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCA 2794611 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || |||||||| || || || || ||| | || ||||| ||||| || || ||| Sbjct 2794612 GGAGGAATTCCTTCCTTGTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGAT 2794671 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || ||||| || || ||||||||||| || || || | || |||||||| || Sbjct 2794672 TCCACCTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCATCTT 2794727 Score = 132 bits (146), Expect = 9e-26 Identities = 183/255 (72%), Gaps = 1/255 (0%) Strand=Plus/Plus Query 171819 AGTATACTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGC 171877 ||| | ||||||| | ||| || |||||| | ||| || || || | || | ||| | Sbjct 3108629 AGTCTTCTTTTTACGCTTCTTACCACCACCACGAAGACGCAAAACGAGGTGAAGAGTGGA 3108688 Query 171878 CTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAA 171937 ||| || || || ||||| || |||| ||| | || || || || |||||||| || Sbjct 3108689 CTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATCTTCTAACTGCTTACCAGCGAA 3108748 Query 171938 AATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 171997 ||| | | ||||| ||||| || ||||||||||| ||||| ||||| | || ||||| Sbjct 3108749 AATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTGCTCTTGACATT 3108808 Query 171998 AGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 172057 | ||||| || || || || || || || ||||| || ||||| || | ||||| | Sbjct 3108809 ATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGAC 3108868 Query 172058 GAATATCTGCATTTT 172072 ||| || |||||||| Sbjct 3108869 GAAAATTTGCATTTT 3108883 Score = 109 bits (120), Expect = 1e-18 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | |||||||| | |||| ||| || ||| || || Sbjct 3969241 ATGATACCACCACGAAGACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAG 3969182 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | || || | || || ||||| || ||||| || || | | ||||||||| Sbjct 3969181 TCAGAAAGAGTACGGCCATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCA 3969122 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || |||||||| || ||||| ||||| | || ||||| ||||| || || || Sbjct 3969121 GGAGGAATTCCTTCCTTGTCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGAC 3969062 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || || || || || || || | ||| |||||||| Sbjct 3969061 TCCACCTCAAGGGTGATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 3969009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135954743200