Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2 136 1e-26
seq1 129 2e-24
>seq2
Length=4539804
Score = 136 bits (150), Expect = 1e-26
Identities = 349/521 (67%), Gaps = 19/521 (4%)
Strand=Plus/Minus
Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911
||| || | ||||| ||| | ||| ||||| |||| || | || || || | ||
Sbjct 4317664 ATCGAATCGACCAGGACGTAGAAGTGCCGGGTCCAATACGTCTGGTCGATTAGTACCAGC 4317605
Query 288912 CAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAG 288971
||||| || ||| |||| | | |||| || ||||| ||| | ||||||||
Sbjct 4317604 GAATACGACGATATGTTCGCTAGACGTAAAACCGTCCATTTCAACTAATAGCTGATTAAG 4317545
Query 288972 TGTTTGTTCCCTTTCATCATTTGAACCTC-TTGAATCACCCGAATCGCTCCtttttttAC 289030
|| ||| | ||||||||| ||||| ||| || || || ||| || |||||
Sbjct 4317544 AGTGCTTTCGCGTTCATCATTGGAACCAAATTG--TCCTCCACGTC-CTC-TTGCTTTAC 4317489
Query 289031 CAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAA 289090
||| ||||||||||| || |||||||| | ||| |||| || | | ||| | ||||
Sbjct 4317488 CAATTGCATCAATTTCATCTATGAAAATAATACAAGGAGCGTTCTTGCGAGCAGTAGCAA 4317429
Query 289091 ATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGG 289150
| | |||||||| ||||| | ||||| ||||||| ||||||| | ||| |||||| | |
Sbjct 4317428 AAAGATCTCTTACGCGGGAAGGTCCAACACCAACAAACATTTCAAGAAACTCAGAACCTG 4317369
Query 289151 --ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208
| |||| || || | || || ||||| || || || | || ||||| || ||
Sbjct 4317368 ACACACTTAAA--AAAGGGACGTTAGCTTCACCAGCGGTGGCTTTAGCAAGAAGAGTTTT 4317311
Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAA---CTCCCTTTGGTACTTTTGCCCCAGCAGA 289265
||| || ||||| || | | | |||| | || || | ||| ||||| ||
Sbjct 4317310 ACCGGTACCAGGAGGAC---CAGAAAGAATGGCACCACGAGGAATTTTAGCCCC--CAAC 4317256
Query 289266 CTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323
||| ||| || || | |||||||||| || | |||| || || | ||| |||
Sbjct 4317255 CTTTCATAAAACTTGGGATTTTTTAAAAATTTGACGAATTCCATAATCTCTTCTTTAGCC 4317196
Query 289324 TCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATC 289364
|| ||| || || ||||||||||| | || || |||||
Sbjct 4317195 TCGTCAACGCCAGCGACATCAGCAAATTTTATTTTGATATC 4317155
Score = 111 bits (122), Expect = 5e-19
Identities = 225/329 (68%), Gaps = 10/329 (3%)
Strand=Plus/Plus
Query 133501 TGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTG 133560
||| | |||| | ||||| ||||||| ||||| || || || || ||| ||||
Sbjct 3722408 TGCAATTCGTTTGGTTGCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTGGATCGTTTGC 3722467
Query 133561 CTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACT 133620
|||||||||||||||||| || ||||| || | ||||| || |||||| || ||| |
Sbjct 3722468 CTCTATTTTTTGGCTTAAGAAACGTGGACTTATGCCTGGTCTTACTTTTTCCAATGAATT 3722527
Query 133621 TATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC-GTTTTA-CTTCACTCTAAATTA 133678
|||| | || |||| ||||||||||| |||||| |||| | || | || | ||
Sbjct 3722528 GATTTGTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTTTGATGTTTAGTC--ATTTG 3722585
Query 133679 GAGC---GACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATT 133735
||| ||||| | ||| | |||||| |||||| ||||| ||||| |||
Sbjct 3722586 AAGCACAGACCAGGCCGCAAGGTT---GTTGAAGCCATTATTGTTGAAGCTGTTGATATT 3722642
Query 133736 GAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTG 133795
||| |||| ||| ||||| || || | ||||||||||| | | ||
Sbjct 3722643 GAGAAAGAATACTTCACGGACGCTCTTCCCGTTAGTCTGCTTGGTATGAATAAGGATTTG 3722702
Query 133796 ATGCAGCGTTATATTGAATTTGTAGCTGA 133824
||| | |||||||||||||| |||||
Sbjct 3722703 ATGTGTCAGTATATTGAATTTGTTGCTGA 3722731
Score = 95.1 bits (104), Expect = 4e-14
Identities = 131/183 (72%), Gaps = 3/183 (2%)
Strand=Plus/Minus
Query 301770 ATAAATAGTACAGGATGGATTCTTTGTGTTTTCCGATAGAGACAGAATTTCTTCAATACG 301829
||||||||| | || || |||| | |||| | | | || |||||||| | |||
Sbjct 1594817 ATAAATAGTTAAAGAAGGGGTCTTAATATTTTTAGCGACATTCAAAATTTCTTTCAAACG 1594758
Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889
|||||||| ||| ||||| ||| || | ||||||||| | ||||| ||||| ||
Sbjct 1594757 AGGAACACCCAAGGTAACGTT---CTTAGAAGAAACACCAGCGTAATGGAATGTATTGAG 1594701
Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949
|| | |||||| | ||| || |||||| |||||| || | |||| |||||||||||
Sbjct 1594700 TGTCATTTGAGTTGCTGGTTCTCCAATAGATTGTGCAGCCAGAGTACCCACCATTTCTCC 1594641
Query 301950 TGG 301952
||
Sbjct 1594640 AGG 1594638
>seq1
Length=5579133
Score = 129 bits (142), Expect = 2e-24
Identities = 315/475 (66%), Gaps = 7/475 (1%)
Strand=Plus/Minus
Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029
||||| | ||| ||| |||| || || ||||| || ||| || ||| | ||| |||
Sbjct 4228262 TCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAGGC 4228203
Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086
|||| ||| ||||| |||| | ||| || || || || ||||| |||||
Sbjct 4228202 TCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAGCT 4228143
Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146
|| || ||| | |||| | ||| || | ||| || |||||||| ||||| ||||| |
Sbjct 4228142 GTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAGTTCCAGCA 4228083
Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTA 156206
|||| |||||| | || | || || ||||||| | |||||||| || | ||
Sbjct 4228082 ATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCTTG 4228023
Query 156207 GAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATT 156266
|| || ||| || ||| | || | | | || ||||||||||| || |||| |||
Sbjct 4228022 GAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCATC 4227963
Query 156267 GATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGT 156326
| | || | || ||| | ||| || || || || || || ||||| || || |||
Sbjct 4227962 GTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTGGT 4227903
Query 156327 GTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTA--ATCTTCTCAA 156384
| ||||| |||| || | |||||| ||| |||||| || || | || ||||
Sbjct 4227902 GAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAGCT--TCAA 4227845
Query 156385 GATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTC 156439
| ||||| |||| | | ||| | ||| |||||||||||| |||||
Sbjct 4227844 TGTCCTCACCGTGGATACCAACGGCGACACGCATAATCATATGCTGAGGGCGCTC 4227790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817524569348
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |