Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 136 1e-26 seq1 129 2e-24 >seq2 Length=4539804 Score = 136 bits (150), Expect = 1e-26 Identities = 349/521 (67%), Gaps = 19/521 (4%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 ||| || | ||||| ||| | ||| ||||| |||| || | || || || | || Sbjct 4317664 ATCGAATCGACCAGGACGTAGAAGTGCCGGGTCCAATACGTCTGGTCGATTAGTACCAGC 4317605 Query 288912 CAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAG 288971 ||||| || ||| |||| | | |||| || ||||| ||| | |||||||| Sbjct 4317604 GAATACGACGATATGTTCGCTAGACGTAAAACCGTCCATTTCAACTAATAGCTGATTAAG 4317545 Query 288972 TGTTTGTTCCCTTTCATCATTTGAACCTC-TTGAATCACCCGAATCGCTCCtttttttAC 289030 || ||| | ||||||||| ||||| ||| || || || ||| || ||||| Sbjct 4317544 AGTGCTTTCGCGTTCATCATTGGAACCAAATTG--TCCTCCACGTC-CTC-TTGCTTTAC 4317489 Query 289031 CAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAA 289090 ||| ||||||||||| || |||||||| | ||| |||| || | | ||| | |||| Sbjct 4317488 CAATTGCATCAATTTCATCTATGAAAATAATACAAGGAGCGTTCTTGCGAGCAGTAGCAA 4317429 Query 289091 ATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGG 289150 | | |||||||| ||||| | ||||| ||||||| ||||||| | ||| |||||| | | Sbjct 4317428 AAAGATCTCTTACGCGGGAAGGTCCAACACCAACAAACATTTCAAGAAACTCAGAACCTG 4317369 Query 289151 --ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | |||| || || | || || ||||| || || || | || ||||| || || Sbjct 4317368 ACACACTTAAA--AAAGGGACGTTAGCTTCACCAGCGGTGGCTTTAGCAAGAAGAGTTTT 4317311 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAA---CTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 ||| || ||||| || | | | |||| | || || | ||| ||||| || Sbjct 4317310 ACCGGTACCAGGAGGAC---CAGAAAGAATGGCACCACGAGGAATTTTAGCCCC--CAAC 4317256 Query 289266 CTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 ||| ||| || || | |||||||||| || | |||| || || | ||| ||| Sbjct 4317255 CTTTCATAAAACTTGGGATTTTTTAAAAATTTGACGAATTCCATAATCTCTTCTTTAGCC 4317196 Query 289324 TCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATC 289364 || ||| || || ||||||||||| | || || ||||| Sbjct 4317195 TCGTCAACGCCAGCGACATCAGCAAATTTTATTTTGATATC 4317155 Score = 111 bits (122), Expect = 5e-19 Identities = 225/329 (68%), Gaps = 10/329 (3%) Strand=Plus/Plus Query 133501 TGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTG 133560 ||| | |||| | ||||| ||||||| ||||| || || || || ||| |||| Sbjct 3722408 TGCAATTCGTTTGGTTGCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTGGATCGTTTGC 3722467 Query 133561 CTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACT 133620 |||||||||||||||||| || ||||| || | ||||| || |||||| || ||| | Sbjct 3722468 CTCTATTTTTTGGCTTAAGAAACGTGGACTTATGCCTGGTCTTACTTTTTCCAATGAATT 3722527 Query 133621 TATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC-GTTTTA-CTTCACTCTAAATTA 133678 |||| | || |||| ||||||||||| |||||| |||| | || | || | || Sbjct 3722528 GATTTGTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTTTGATGTTTAGTC--ATTTG 3722585 Query 133679 GAGC---GACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATT 133735 ||| ||||| | ||| | |||||| |||||| ||||| ||||| ||| Sbjct 3722586 AAGCACAGACCAGGCCGCAAGGTT---GTTGAAGCCATTATTGTTGAAGCTGTTGATATT 3722642 Query 133736 GAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTG 133795 ||| |||| ||| ||||| || || | ||||||||||| | | || Sbjct 3722643 GAGAAAGAATACTTCACGGACGCTCTTCCCGTTAGTCTGCTTGGTATGAATAAGGATTTG 3722702 Query 133796 ATGCAGCGTTATATTGAATTTGTAGCTGA 133824 ||| | |||||||||||||| ||||| Sbjct 3722703 ATGTGTCAGTATATTGAATTTGTTGCTGA 3722731 Score = 95.1 bits (104), Expect = 4e-14 Identities = 131/183 (72%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 301770 ATAAATAGTACAGGATGGATTCTTTGTGTTTTCCGATAGAGACAGAATTTCTTCAATACG 301829 ||||||||| | || || |||| | |||| | | | || |||||||| | ||| Sbjct 1594817 ATAAATAGTTAAAGAAGGGGTCTTAATATTTTTAGCGACATTCAAAATTTCTTTCAAACG 1594758 Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 |||||||| ||| ||||| ||| || | ||||||||| | ||||| ||||| || Sbjct 1594757 AGGAACACCCAAGGTAACGTT---CTTAGAAGAAACACCAGCGTAATGGAATGTATTGAG 1594701 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 || | |||||| | ||| || |||||| |||||| || | |||| ||||||||||| Sbjct 1594700 TGTCATTTGAGTTGCTGGTTCTCCAATAGATTGTGCAGCCAGAGTACCCACCATTTCTCC 1594641 Query 301950 TGG 301952 || Sbjct 1594640 AGG 1594638 >seq1 Length=5579133 Score = 129 bits (142), Expect = 2e-24 Identities = 315/475 (66%), Gaps = 7/475 (1%) Strand=Plus/Minus Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 ||||| | ||| ||| |||| || || ||||| || ||| || ||| | ||| ||| Sbjct 4228262 TCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAGGC 4228203 Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086 |||| ||| ||||| |||| | ||| || || || || ||||| ||||| Sbjct 4228202 TCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAGCT 4228143 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || || ||| | |||| | ||| || | ||| || |||||||| ||||| ||||| | Sbjct 4228142 GTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAGTTCCAGCA 4228083 Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTA 156206 |||| |||||| | || | || || ||||||| | |||||||| || | || Sbjct 4228082 ATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCTTG 4228023 Query 156207 GAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATT 156266 || || ||| || ||| | || | | | || ||||||||||| || |||| ||| Sbjct 4228022 GAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCATC 4227963 Query 156267 GATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGT 156326 | | || | || ||| | ||| || || || || || || ||||| || || ||| Sbjct 4227962 GTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTGGT 4227903 Query 156327 GTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTA--ATCTTCTCAA 156384 | ||||| |||| || | |||||| ||| |||||| || || | || |||| Sbjct 4227902 GAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAGCT--TCAA 4227845 Query 156385 GATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTC 156439 | ||||| |||| | | ||| | ||| |||||||||||| ||||| Sbjct 4227844 TGTCCTCACCGTGGATACCAACGGCGACACGCATAATCATATGCTGAGGGCGCTC 4227790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817524569348