Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 154 1e-32 seq2 111 1e-19 >seq1 Length=5579133 Score = 154 bits (170), Expect = 1e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||||||| | ||||| || || ||||| || ||||| || || || ||| || Sbjct 3238365 ACGATGCAGATCTTTGTAAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCC 3238306 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || || |||||||| || |||||||| ||||| ||| Sbjct 3238305 TCTGACACTATTGACAATGTCAAGAGCAAAATCCAAGATAAGGAAGGAATTCCTCCTGAT 3238246 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 |||||||||||||||||||| || || || || ||||| | | |||| |||||| Sbjct 3238245 CAACAACGTTTGATCTTTGCTGGCAAGCAACTCGAGGACGGACGTACTTTGTCTGATTAT 3238186 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| |||||||| || || || ||| | || ||||| Sbjct 3238185 AACATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCG 3238148 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24696 TTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAG 24755 |||| | ||||||||| ||| | || || | || ||||||||||| || || || || | Sbjct 2794732 TTGAAAAGATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGG 2794673 Query 24756 AAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTC 24815 || || | ||||| | || | || || ||||| || ||||| |||||||| |||| Sbjct 2794672 AATCCTCTGACACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTC 2794613 Query 24816 CCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAG 24875 | ||||||||||| ||||| |||||||| || ||| |||||||| | | | || | Sbjct 2794612 CTGATCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTG 2794553 Query 24876 ATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||| || || ||||| || || || || |||||||| Sbjct 2794552 ATTACAATATCCAAAAAGAGTCCACTCTTCACTTGGT 2794516 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || ||||| || ||||| || || || || || | Sbjct 3108880 ATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAGTCCTCT 3108821 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||||||||||||||| ||||| |||||| Sbjct 3108820 GACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCTGATCAA 3108761 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || || || || ||| | || ||| | | |||| ||||| ||| Sbjct 3108760 CAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGATTACAAC 3108701 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||||||| || || || ||| | || ||||| Sbjct 3108700 ATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCG 3108666 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | ||||| || ||||| || || || || || || | Sbjct 3969009 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACTATCACCCTTGAGGTGGAGTCCTCT 3969068 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||||||||| |||||||| ||||| || ||| Sbjct 3969069 GACACTATTGACAATGTCAAGAGCAAAATCCAAGACAAGGAAGGAATTCCTCCTGACCAA 3969128 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || || || || | |||||| | | | || || || ||| Sbjct 3969129 CAACGTCTTATCTTCGCTGGAAAGCAATTAGAGGATGGCCGTACTCTTTCTGACTACAAC 3969188 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||| || || || || || || Sbjct 3969189 ATTCAAAAGGAGTCTACCCTTCATTTAGT 3969217 >seq2 Length=4539804 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | || |||||||| ||||| | ||||| || | | Sbjct 1045338 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045279 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||| || || || ||||| || ||||| |||||| Sbjct 1045278 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045219 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || ||||| || || || || || ||| | | | |||||||| ||| Sbjct 1045218 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045159 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||||||||| || || ||||| |||| Sbjct 1045158 ATTCAAAAGGAGTCTACTCTACATCTTG 1045131 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 24700 TACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGC 24759 ||| |||||||| || | || || |||| || || |||||||| | ||||| ||| | Sbjct 1045570 TACCATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATC 1045511 Query 24760 CACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 |||| || | || | ||||| ||||| || || || ||||| || ||||| || Sbjct 1045510 TTCCGATACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGA 1045451 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 |||||||||| | || ||||| || || || || || ||| | | | |||||||| Sbjct 1045450 TCAACAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTA 1045391 Query 24880 TAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||||| || || || ||| Sbjct 1045390 CAACATTCAAAAGGAGTCTACTCTTCAC 1045363 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | || |||||||| ||||| | ||||| || | | Sbjct 1044654 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044595 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||| || || || ||||| || ||||| |||||| Sbjct 1044594 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044535 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || ||||| || || || || || ||| | | | |||||||| ||| Sbjct 1044534 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1044475 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||||||||| || || || ||| Sbjct 1044474 ATTCAAAAGGAGTCTACTCTTCAC 1044451 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | || |||||||| ||||| | ||||| || | | Sbjct 1044882 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044823 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||| || || || ||||| || ||||| |||||| Sbjct 1044822 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044763 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || ||||| || || || || || || | | | |||||||| ||| Sbjct 1044762 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAAC 1044703 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||||||||| || || ||||| |||| Sbjct 1044702 ATTCAAAAGGAGTCTACTCTACATCTTG 1044675 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | || |||||||| ||||| | ||||| || | | Sbjct 1045110 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045051 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||| || || || ||||| || ||||| |||||| Sbjct 1045050 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044991 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || ||||| || || || || || || | | | |||||||| ||| Sbjct 1044990 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAAC 1044931 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||||||||| || || || ||| Sbjct 1044930 ATTCAAAAGGAGTCTACTCTTCAC 1044907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897577505120