Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq2 98.7 8e-16
>seq2
Length=4539804
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| ||||||||||| || || || ||||||||||| | ||| ||| ||
Sbjct 1044654 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044595
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | ||||| |||||| || || |||||| | || ||||||
Sbjct 1044594 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044535
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | ||||||| ||| ||||| || || || |||| | || | | |||||||||
Sbjct 1044534 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1044475
Query 110453 ATTCAAAAAGAATCTAC 110469
|||||||| || |||||
Sbjct 1044474 ATTCAAAAGGAGTCTAC 1044458
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| ||||||||||| || || || ||||||||||| | ||| ||| ||
Sbjct 1045338 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045279
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | ||||| |||||| || || |||||| | || ||||||
Sbjct 1045278 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045219
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | ||||||| ||| ||||| || || || |||| | || | | |||||||||
Sbjct 1045218 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045159
Query 110453 ATTCAAAAAGAATCTAC 110469
|||||||| || |||||
Sbjct 1045158 ATTCAAAAGGAGTCTAC 1045142
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| ||||||||||| || || || ||||||||||| | ||| ||| ||
Sbjct 1044882 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044823
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | ||||| |||||| || || |||||| | || ||||||
Sbjct 1044822 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044763
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | ||||||| ||| ||||| || || || || | | || | | |||||||||
Sbjct 1044762 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAAC 1044703
Query 110453 ATTCAAAAAGAATCTAC 110469
|||||||| || |||||
Sbjct 1044702 ATTCAAAAGGAGTCTAC 1044686
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| ||||||||||| || || || ||||||||||| | ||| ||| ||
Sbjct 1045110 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045051
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | ||||| |||||| || || |||||| | || ||||||
Sbjct 1045050 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044991
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | ||||||| ||| ||||| || || || || | | || | | |||||||||
Sbjct 1044990 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAAC 1044931
Query 110453 ATTCAAAAAGAATCTAC 110469
|||||||| || |||||
Sbjct 1044930 ATTCAAAAGGAGTCTAC 1044914
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||| || ||||| || || || ||||| | ||| || || |
Sbjct 1045566 ATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCC 1045507
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | | ||||| |||||| || || |||||| | || ||||||
Sbjct 1045506 GATACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045447
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | ||||||| ||| ||||| || || || |||| | || | | |||||||||
Sbjct 1045446 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045387
Query 110453 ATTCAAAAAGAATCTAC 110469
|||||||| || |||||
Sbjct 1045386 ATTCAAAAGGAGTCTAC 1045370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412841579873972
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |