Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq2 113 7e-20
>seq2
Length=4539804
Score = 113 bits (124), Expect = 7e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | || |||||||| ||||| || ||||| | || || ||| | ||
Sbjct 1045565 TGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCCG 1045506
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| | |||||||| | || || || ||| ||||||||||| || |||||||
Sbjct 1045505 ATACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAAC 1045446
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | || |||||||| ||||| ||| | || ||| | || | ||||||| || |
Sbjct 1045445 AACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACA 1045386
Query 146212 TACAAAAAGAATCGACT 146228
| ||||| || || |||
Sbjct 1045385 TTCAAAAGGAGTCTACT 1045369
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | ||||| || || || ||||| ||||| | || || || | |
Sbjct 1045337 TGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTG 1045278
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | || ||||| | || || || ||| ||||||||||| || |||||||
Sbjct 1045277 ACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAAC 1045218
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | || |||||||| ||||| ||| | || ||| | || | ||||||| || |
Sbjct 1045217 AACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACA 1045158
Query 146212 TACAAAAAGAATCGACTATCCAT 146234
| ||||| || || ||| | |||
Sbjct 1045157 TTCAAAAGGAGTCTACTCTACAT 1045135
Score = 89.7 bits (98), Expect = 8e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | ||||| || || || ||||| ||||| | || || || | |
Sbjct 1044653 TGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTG 1044594
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | || ||||| | || || || ||| ||||||||||| || |||||||
Sbjct 1044593 ACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAAC 1044534
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | || |||||||| ||||| ||| | || ||| | || | ||||||| || |
Sbjct 1044533 AACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACA 1044474
Query 146212 TACAAAAAGAATCGACT 146228
| ||||| || || |||
Sbjct 1044473 TTCAAAAGGAGTCTACT 1044457
Score = 87.8 bits (96), Expect = 3e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | ||||| || || || ||||| ||||| | || || || | |
Sbjct 1044881 TGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTG 1044822
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | || ||||| | || || || ||| ||||||||||| || |||||||
Sbjct 1044821 ACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAAC 1044762
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | || |||||||| ||||| ||| | || || | || | ||||||| || |
Sbjct 1044761 AACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAACA 1044702
Query 146212 TACAAAAAGAATCGACTATCCAT 146234
| ||||| || || ||| | |||
Sbjct 1044701 TTCAAAAGGAGTCTACTCTACAT 1044679
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | ||||| || || || ||||| ||||| | || || || | |
Sbjct 1045109 TGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTG 1045050
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | || ||||| | || || || ||| ||||||||||| || |||||||
Sbjct 1045049 ACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAAC 1044990
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | || |||||||| ||||| ||| | || || | || | ||||||| || |
Sbjct 1044989 AACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAACA 1044930
Query 146212 TACAAAAAGAATCGACT 146228
| ||||| || || |||
Sbjct 1044929 TTCAAAAGGAGTCTACT 1044913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786166360691680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |