Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq1 141 7e-29
seq2 105 5e-18
>seq1
Length=5579133
Score = 141 bits (156), Expect = 7e-29
Identities = 165/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| ||||| ||||| |||||||| || || ||||| | || || |||
Sbjct 2794509 ACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACC 2794568
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | || || || ||| | ||||||| ||| ||||| || ||||| || || ||
Sbjct 2794569 ATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTT 2794628
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||| || ||| || | |||||| | || | ||||||||| ||| || || || ||||
Sbjct 2794629 GTCCTG-AATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTA 2794687
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
||||||| ||||| || || || ||||| |||||||| ||
Sbjct 2794688 TAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCATCTT 2794727
Score = 132 bits (146), Expect = 4e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||||| || | ||||| ||||| || ||||| ||||||||||| | | || ||
Sbjct 3238147 ACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCC 3238206
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| |||||||| ||||||||| | ||||| | ||| ||||| || ||||| || || ||
Sbjct 3238207 GTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTT 3238266
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| | ||| |||||| | || | ||||||||| ||| || ||||| || ||
Sbjct 3238267 ATCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAAT 3238326
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || | |||||| ||||| ||||||||
Sbjct 3238327 GGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362
Score = 105 bits (116), Expect = 5e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || |||||||| || || || ||||||||||| || || | || || ||
Sbjct 3969224 ACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCC 3969165
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | ||| || ||||| | || | | ||| || || || ||||| || || ||
Sbjct 3969164 ATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTT 3969105
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | ||| |||||| | || | ||||||||| || || ||||| || ||
Sbjct 3969104 GTCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGAT 3969045
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| || || || || || || || || ||||||||
Sbjct 3969044 AGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 3969009
Score = 102 bits (112), Expect = 6e-17
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||||| || | ||||| ||||| || ||||| ||||| ||||| | | || ||
Sbjct 3108665 ACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCC 3108724
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | || || ||||| | || | | ||| ||||| || ||||| || |||||
Sbjct 3108725 ATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTT 3108784
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | ||| |||||| | || | ||||||||| || || ||||| || ||
Sbjct 3108785 GTCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAAT 3108844
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || || | |||||| || || || ||||||||
Sbjct 3108845 CGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTT 3108883
>seq2
Length=4539804
Score = 105 bits (116), Expect = 5e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||||| || || || ||||||||||| ||||| | || || ||
Sbjct 1044439 ACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1044498
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || ||||| || |||||| | || | | ||| ||||| || ||||| || || ||
Sbjct 1044499 ATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1044558
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || ||| || | || || | || | ||||||||| || ||||| | || |
Sbjct 1044559 ATCCTG-AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAA 1044617
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| ||||| ||||| |||||||| ||||| || |||||
Sbjct 1044618 TGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654
Score = 105 bits (116), Expect = 5e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||| || || || || ||||||||||| ||||| | || || ||
Sbjct 1045123 ACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1045182
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || ||||| || |||||| | || | | ||| ||||| || ||||| || || ||
Sbjct 1045183 ATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1045242
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || ||| || | || || | || | ||||||||| || ||||| | || |
Sbjct 1045243 ATCCTG-AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAA 1045301
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| ||||| ||||| |||||||| ||||| || |||||
Sbjct 1045302 TGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||| || || || || ||||||||||| ||||| | || || ||
Sbjct 1044667 ACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1044726
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || ||||| || |||||| | || | | ||| ||||| || ||||| || || ||
Sbjct 1044727 GTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1044786
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || ||| || | || || | || | ||||||||| || ||||| | || |
Sbjct 1044787 ATCCTG-AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAA 1044845
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| ||||| ||||| |||||||| ||||| || |||||
Sbjct 1044846 TGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||||| || || || ||||||||||| ||||| | || || ||
Sbjct 1044895 ACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1044954
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || ||||| || |||||| | || | | ||| ||||| || ||||| || || ||
Sbjct 1044955 GTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1045014
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || ||| || | || || | || | ||||||||| || ||||| | || |
Sbjct 1045015 ATCCTG-AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAA 1045073
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| ||||| ||||| |||||||| ||||| || |||||
Sbjct 1045074 TGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||||| || || || ||||||||||| ||||| | || || ||
Sbjct 1045351 ACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1045410
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || ||||| || |||||| | || | | ||| ||||| || ||||| || || ||
Sbjct 1045411 ATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1045470
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || ||| || | || ||| | || | || || ||| ||| ||||| | || |
Sbjct 1045471 ATCCTG-AATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAA 1045529
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||| || |||||||| || || || || ||||||||
Sbjct 1045530 TAGTCTTTCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385219181220564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |