Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq2 174 3e-38
seq1 161 2e-34
>seq2
Length=4539804
Score = 174 bits (192), Expect = 3e-38
Identities = 178/230 (77%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| ||||| | ||| |||||||| || || || || || ||||| |
Sbjct 1045338 TACCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTG 1045397
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | || ||||| ||||| || |||||||| || || | ||||||||| ||||
Sbjct 1045398 AAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAG 1045457
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760
| || ||||||||||| |||||| ||||| |||||||| ||||| ||||| || |||
Sbjct 1045458 GAATGCCTTCCTTATCCTGAATC-TTGCTCTTTACATTGTCAATGGTATCGGAAGATTCA 1045516
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || || ||||| || || || ||||| || || ||||||||
Sbjct 1045517 ACTTCCAATGTAATAGTCTTTCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566
Score = 165 bits (182), Expect = 2e-35
Identities = 176/230 (77%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| ||||| | ||| |||||||| || || || || || ||||| |
Sbjct 1044882 TACCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTG 1044941
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | |||||||| ||||| || |||||||| || || | ||||||||| ||||
Sbjct 1044942 AAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAG 1045001
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760
| || ||||||||||| |||||| ||||| ||||| || ||||| || ||| || ||
Sbjct 1045002 GAATGCCTTCCTTATCCTGAATC-TTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCA 1045060
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || || || || || ||||| || || ||||| || |||||
Sbjct 1045061 ACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110
Score = 159 bits (176), Expect = 7e-34
Identities = 167/217 (77%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| ||||| | ||| |||||||| || || || || || ||||| || ||| | | ||
Sbjct 1044439 ACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCC 1044498
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| ||||| || |||||||| || || | ||||||||| ||||| || ||||||||
Sbjct 1044499 ATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTT 1044558
Query 82715 ATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773
||| |||||| ||||| ||||| || ||||| || ||| || || |||||||| || |
Sbjct 1044559 ATCCTGAATC-TTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAA 1044617
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || || || ||||| || || ||||| || |||||
Sbjct 1044618 TGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654
Score = 159 bits (176), Expect = 7e-34
Identities = 175/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| ||||| | || |||||||| || || || || || ||||| |
Sbjct 1044654 TACCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTG 1044713
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | |||||||| ||||| || |||||||| || || | ||||||||| ||||
Sbjct 1044714 AAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAG 1044773
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760
| || ||||||||||| |||||| ||||| ||||| || ||||| || ||| || ||
Sbjct 1044774 GAATGCCTTCCTTATCCTGAATC-TTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCA 1044832
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || || || || || ||||| || || ||||| || |||||
Sbjct 1044833 ACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882
Score = 156 bits (172), Expect = 8e-33
Identities = 174/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| ||||| | || |||||||| || || || || || ||||| |
Sbjct 1045110 TACCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTG 1045169
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | || ||||| ||||| || |||||||| || || | ||||||||| ||||
Sbjct 1045170 AAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAG 1045229
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760
| || ||||||||||| |||||| ||||| ||||| || ||||| || ||| || ||
Sbjct 1045230 GAATGCCTTCCTTATCCTGAATC-TTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCA 1045288
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || || || || || ||||| || || ||||| || |||||
Sbjct 1045289 ACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338
>seq1
Length=5579133
Score = 161 bits (178), Expect = 2e-34
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| ||||| ||||| ||||| || ||||| || ||||| |||||||
Sbjct 2794496 TACCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAG 2794555
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | ||| || || | || ||||| ||||| || | || ||||||||| ||||
Sbjct 2794556 AAAGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAG 2794615
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| ||||||||||| || |||||||| || ||||| ||||| || ||| | ||| |
Sbjct 2794616 GAATTCCTTCCTTGTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCA 2794675
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || | ||||| || || || ||||| ||||| ||||| ||||||||
Sbjct 2794676 CCTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCAT 2794724
Score = 154 bits (170), Expect = 3e-32
Identities = 166/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||||| ||| | ||| ||||| || || || || || ||||||||||| | | | | ||
Sbjct 3238147 ACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCC 3238206
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||| || ||||| || ||||||||||| | | ||||||||| ||||| |||||||||||
Sbjct 3238207 GTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTT 3238266
Query 82715 ATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773
|||||| || |||||| || ||||| ||||| || ||| | ||| || || | || |
Sbjct 3238267 ATCTTGGAT-TTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAA 3238325
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| || || | || |||||||| ||||||||
Sbjct 3238326 TGGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362
Score = 149 bits (164), Expect = 1e-30
Identities = 175/234 (75%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| |||||||| || || ||||| || || || || || || ||||
Sbjct 3969237 TACCACCACGAAGACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAG 3969178
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | || || |||| ||| |||||||| ||||| || | |||||| || ||||
Sbjct 3969177 AAAGAGTACGGCCATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAG 3969118
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760
| ||||||||||| ||||| || |||||| || ||||| ||||| || ||| | ||
Sbjct 3969117 GAATTCCTTCCTTGTCTTGGAT-TTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCC 3969059
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814
|| || | || || ||||| || ||||| ||||| || || |||||||| |||
Sbjct 3969058 ACCTCAAGGGTGATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCATGATT 3969005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981827149681356
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |