Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq1 102 8e-17
>seq1
Length=5579133
Score = 102 bits (112), Expect = 8e-17
Identities = 149/208 (72%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | ||| ||||| || || || ||||| || | || | | | ||||| |
Sbjct 3969214 AAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCA-TCCTCTAA 3969156
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||| || ||| | || || || || ||||| ||||| || ||||||||||| |||
Sbjct 3969155 TTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGGAT 3969096
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|| ||||| | |||| ||||| | || |||||| || | ||||| || || ||
Sbjct 3969095 TTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTTCC 3969036
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661
||||| ||| || |||||||||||||||
Sbjct 3969035 GGTCAAAGTCTTGACGAAAATCTGCATG 3969008
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
||||||||||| || ||||||||||| | || ||| | ||||| | |||||| ||
Sbjct 2794528 GTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCA-TCCTCCAACTGCTTTCC 2794586
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| |||| | || || || || ||||| || ||||||||||| ||||| |||
Sbjct 2794587 GGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTTACTCTT 2794646
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| ||||| | || ||||| || | ||| | ||||| || |||| |||
Sbjct 2794647 GACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTACCAGTCAAAGT 2794706
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || |||||||||||
Sbjct 2794707 CTTGACAAAAATCTGCAT 2794724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420775828960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |