Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1 102 8e-17 >seq1 Length=5579133 Score = 102 bits (112), Expect = 8e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| || || || ||||| || | || | | | ||||| | Sbjct 3969214 AAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCA-TCCTCTAA 3969156 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | || || || || ||||| ||||| || ||||||||||| ||| Sbjct 3969155 TTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGGAT 3969096 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||||| | |||| ||||| | || |||||| || | ||||| || || || Sbjct 3969095 TTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTTCC 3969036 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| ||| || ||||||||||||||| Sbjct 3969035 GGTCAAAGTCTTGACGAAAATCTGCATG 3969008 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||| || ||||||||||| | || ||| | ||||| | |||||| || Sbjct 2794528 GTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCA-TCCTCCAACTGCTTTCC 2794586 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | || || || || ||||| || ||||||||||| ||||| ||| Sbjct 2794587 GGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTTACTCTT 2794646 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | || ||||| || | ||| | ||||| || |||| ||| Sbjct 2794647 GACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTACCAGTCAAAGT 2794706 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 2794707 CTTGACAAAAATCTGCAT 2794724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420775828960