Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 187 6e-42 seq2 96.9 8e-15 >seq1 Length=5579133 Score = 187 bits (206), Expect = 6e-42 Identities = 550/838 (66%), Gaps = 11/838 (1%) Strand=Plus/Plus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 ||||| ||||| ||| | || ||| |||||||| | ||| || | ||| | | ||| Sbjct 4227733 TTTGGCTTCAAGACTTTAGAGCGTTCTTATTTATTGCGTATCGACGGCAAAGTTGCTGAG 4227792 Query 110367 CGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCT 110426 || ||||| || ||| || | ||||| || ||||||| || || | || ||| ||||| Sbjct 4227793 CGCCCTCAGCATATGATTATGCGTGTCGCCGTTGGTATCCACGGTGAGGACATTGAAGCT 4227852 Query 110427 GTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTA 110486 | ||||||| || || | | | || | || |||||| | || || || Sbjct 4227853 GCTATTGAAACATACAATTTGATGTCTCAACGCTACTTTACCCATGCTTCACCAACTCTT 4227912 Query 110487 TTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC--TAGGAATTAACG 110544 || || || || ||| | | ||| | ||||||| |||| || || || | || | Sbjct 4227913 TTCAATGCCGGTACTCCTCGTCCCCAACTCTCTTCTTG-TTTCCTCGTTACGA-TGAAAG 4227970 Query 110545 ATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACT 110604 | || ||||||||||| || || || | || || |||| | || || || | | Sbjct 4227971 ACGACTCTATTGAAGGAATCTACGACACACTCAAGATGTGTGCTATGATCTCCAAGACCG 4228030 Query 110605 CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAG 110664 |||| || ||||||||| | |||| | ||| | ||| || | |||| || | Sbjct 4228031 CTGGCGGTATTGGTATTAATATTCACAACATTAGAGCAACCGGTTCGTATATTGCTGGAA 4228090 Query 110665 CGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAAT 110724 | || ||| |||| | ||| |||| || ||| | | || | |||| |||| || | Sbjct 4228091 CTAATGGTACTTCCAACGGAATTGTCCCCATGATTCGTGTTTACAACAACACAGCTCGTT 4228150 Query 110725 ATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGC 110781 |||| | ||||| ||||| | | ||| | ||||| |||| | || ||||||| Sbjct 4228151 ATGTTGACCAAGGAGGTAATAAGCGTCCTGGTGCCTTTGCAGCCTATTTGGAGCCTTGGC 4228210 Query 110782 ATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAG 110841 || | ||| | | || || ||||||||||| || | ||| || || || | | Sbjct 4228211 ATGCCGATGTTATGGACTTTTTAGAACTTCGAAAGACTCATGGCAACGAGGATTTCCGCG 4228270 Query 110842 CACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAA 110901 |||| || | || ||||| |||||||| | || || || ||| |||||||| || | Sbjct 4228271 CACGCGAAATGTTCTATGCCTTGTGGATTCCTGACTTGTTTATGCAACGTGTTGAACGTA 4228330 Query 110902 ATG-GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGA 110960 | | ||| ||| | | | || || || |||| ||| | | ||||| | || Sbjct 4228331 ACGAGCAA-TGGACCTTCTTCTGCCCCAATGAGGCTCCAGGTTTGGCAGATGTTTGGGGT 4228389 Query 110961 AAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATT 111020 | ||||||| | ||| |||||||| ||||| || || | ||| | | Sbjct 4228390 GACGAGTTTGTTGCCCTCTACGAAAAGTATGAGAAGGAGAACCGTGGTCGTCGTTCATTA 4228449 Query 111021 CCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTAT 111080 || |||||| || |||||| | || ||| ||||||||||||||||||| | ||||| Sbjct 4228450 CCTGCTCAAAAAGTTTGGTACGCCATTCTTCAATCACAAGTTGAAACTGGTAATCCTTTC 4228509 Query 111081 ATTTTGTATAAAGA-TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATT 111137 || |||||||| || |||| || || || || ||||| | |||| | || || ||| Sbjct 4228510 ATGTTGTATAAGGATTCAT-GCAACCGTAAGTCCAATCAGAAGAATGTTGGTACTATT 4228566 >seq2 Length=4539804 Score = 96.9 bits (106), Expect = 8e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 305286 AAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGC 305345 ||||| |||||| ||| | ||| | |||| || ||| ||| |||||||| | | Sbjct 1252985 AAATTGGTGATATCGTTGAGCGTCATCTACATGATAACGATGTAGTTTTGTTCAATCGTC 1252926 Query 305346 AACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATC-TGGATTG 305404 |||| ||||| ||||| | || || |||||||| || || ||| | | ||| | Sbjct 1252925 AACCTTCACTCCATAAGTTATCAATCATGGCTCACTTGGTAAAGGTACGACCATGGCGT- 1252867 Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || || |||| |||| | ||| || || || ||||| ||||||||||| |||||| Sbjct 1252866 ACCTTAAGATTTAATGAATGTGTATGCGGTCCCTACAATGCCGATTTTGATGGCGATGAA 1252807 Query 305465 ATGAATATGCATGTACCTCAATCAAAGGTTACAATGACTGAA 305506 |||||| | ||||| |||||| | ||| ||| ||| ||| Sbjct 1252806 ATGAATTTACATGTTCCTCAAACTGAGGAGGCAAAGACAGAA 1252765 Score = 93.3 bits (102), Expect = 1e-13 Identities = 120/164 (73%), Gaps = 10/164 (6%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | || || || || ||||| || || |||||| |||||||| ||||| | Sbjct 1592793 GTTATTTTTAACAGACAGCCATCCCTTCACAAAATGAGTATGATGGGTCATAGGATTCGC 1592852 Query 305390 GTATTATCTGGATTGACATTTCGATTAAA--TGTAAGTGCTTGTACG---CCTTATAATG 305444 ||| | | | |||||| |||||||| ||| ||| |||| |||||||||| Sbjct 1592853 GTAATGCCGTACTCGACATTCCGATTAAACTTGTCAGT-----TACGTCTCCTTATAATG 1592907 Query 305445 CGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | || |||||||| |||||||||||||||||||| ||||| ||| Sbjct 1592908 CTGACTTTGATGGTGATGAAATGAATATGCATGTCCCTCAGTCA 1592951 Score = 84.2 bits (92), Expect = 5e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 304895 CATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCTCAAAGATCT 304954 ||| |||| || | ||||| |||||||| || ||| ||||| | |||| |||| Sbjct 1592364 CATGTTGCCACGTATATGGACAATGAAATAGCGGGACAGCCTCAGGCTTTACAAAAATCT 1592423 Query 304955 GGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGGT 305014 ||||||||| | || |||| | ||| | || || ||||||||||| | || || Sbjct 1592424 GGCAGACCTCTTAAAAGTATCCGTGCACGGCTCAAGGGAAAAGAGGGTCGATTACGTGGC 1592483 Query 305015 AATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTCAA 305074 || || ||||| ||||| ||||||||| || | | ||| || || |||| ||| Sbjct 1592484 AACCTGATGGGTAAACGGGTTGATTTTTCAGCTCGTACTGTGATTACCGGTGAT--CCAA 1592541 Query 305075 ATTAGTC--TTCATGAATTAGGAGTTCCA 305101 ||| ||| | ||||| | || |||||| Sbjct 1592542 ATTTGTCGTTAGATGAACTCGGTGTTCCA 1592570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812739175844