Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 125 5e-24 seq2 98.7 7e-16 >seq1 Length=5579133 Score = 125 bits (138), Expect = 5e-24 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || |||||| ||||||||| || |||||||| || Sbjct 2794497 ACCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGA 2794556 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || ||||| || ||||||||||||||||| || || ||||| | || Sbjct 2794557 AAGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGG 2794616 Query 33642 CACACCTTCTTTGTCGGCAAT-TTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | ||||| ||||| ||| || || || |||| ||| | ||||| |||||| Sbjct 2794617 AATTCCTTCCTTGTCCTGAATCTTACTCTT--GACATTGTCAATAGTGTCAGAGGATTCC 2794674 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||| || || || || ||||| |||||||| Sbjct 2794675 ACCTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCAT 2794724 Score = 111 bits (122), Expect = 1e-19 Identities = 167/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| || || | || |||||| ||| ||||| ||||| ||||| | Sbjct 3238134 CACCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAG 3238193 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | || ||| |||| || | ||| || || ||||| |||||||| || ||||| | | Sbjct 3238194 ACAAAGTACGTCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAG 3238253 Query 33641 GCACACCTTCTTTGTCGGCAATTTT-CTGTTTCAACATAGTCACG-GTGTCGCTTGATTC 33698 | | ||||| || || ||||| || || |||| |||| ||||| ||||| Sbjct 3238254 GAATTCCTTCCTTATCTTGGATTTTGCTCTTG--ACATTGTCAATAGTGTCAGAGGATTC 3238311 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || |||| || || || ||||| || | |||||||||||||||||||| || Sbjct 3238312 AACCTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCATCGT 3238365 Score = 95.1 bits (104), Expect = 8e-15 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| || || | || |||||| ||| ||||| ||||||||||| | Sbjct 3108652 CACCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAG 3108711 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | || ||| | || || || || || || || ||||| | ||| || ||||| | | Sbjct 3108712 ACAAAGTACGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAG 3108771 Query 33641 GCACACCTTCTTTGTC-GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTC 33698 | | ||||||||||| | | ||| || || |||| || | ||||| || || Sbjct 3108772 GAATTCCTTCTTTGTCTTGGATTTTGCTCTT--GACATTATCAATAGTGTCAGAGGACTC 3108829 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGT 33758 ||| |||| || ||||| ||||| || | ||||| || || || ||||| | | ||| Sbjct 3108830 CACCTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTTGGTTGT 3108889 Query 33759 GTTTA 33763 | ||| Sbjct 3108890 GCTTA 3108894 >seq2 Length=4539804 Score = 98.7 bits (108), Expect = 7e-16 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||||||||| ||| ||||| ||||||||||| || || || ||| |||| || | ||| Sbjct 1044679 ATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTG 1044738 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAAT-TT 33664 || || |||||||| | ||| || ||||| | || | ||||| || || ||| || Sbjct 1044739 CTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTT 1044798 Query 33665 TCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCT 33723 || ||| || | || | |||||| || || || || | || || |||||||| Sbjct 1044799 GCTCTTT--ACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCA 1044856 Query 33724 GTTAACGTTTTTACAAAGATCTGCATA 33750 || || ||||| ||||| || |||||| Sbjct 1044857 GTCAAGGTTTTGACAAAAATTTGCATA 1044883 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||||||||| ||| ||||| ||||||||||| || || || ||| | || || | ||| Sbjct 1045135 ATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTG 1045194 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAAT-TT 33664 || || |||||||| | ||| || ||||| | || | ||||| || || ||| || Sbjct 1045195 CTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTT 1045254 Query 33665 TCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCT 33723 || ||| || | || | |||||| || || || || | || || |||||||| Sbjct 1045255 GCTCTTT--ACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCA 1045312 Query 33724 GTTAACGTTTTTACAAAGATCTGCATA 33750 || || ||||| ||||| || |||||| Sbjct 1045313 GTCAAGGTTTTGACAAAAATTTGCATA 1045339 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| ||||| ||||||||||| || || || ||| |||| || | ||| Sbjct 1044908 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGC 1044967 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAAT-TTT 33665 || || |||||||| | ||| || ||||| | || | ||||| || || ||| || Sbjct 1044968 TTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTG 1045027 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || ||| || | || | |||||| || || || || | || || |||||||| | Sbjct 1045028 CTCTTT--ACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAG 1045085 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | || ||||| ||||| || |||||| Sbjct 1045086 TCAAGGTTTTGACAAAAATTTGCATA 1045111 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| ||||| ||||||||||| || || || ||| | || || | ||| Sbjct 1045364 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGC 1045423 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAAT-TTT 33665 || || |||||||| | ||| || ||||| | || | ||||| || || ||| || Sbjct 1045424 TTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTG 1045483 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || ||| |||| ||| | ||| ||| ||||| || || | || || || || || | Sbjct 1045484 CTCTTT--ACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAATAGTCTTTCCAG 1045541 Query 33725 TTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| || || || || |||||||| || Sbjct 1045542 TTAATGTCTTGACGAAAATCTGCATGGT 1045569 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| ||||| ||||||||||| || || || ||| | || || | ||| Sbjct 1044452 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGC 1044511 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAAT-TTT 33665 || || |||||||| | ||| || ||||| | || | ||||| || || ||| || Sbjct 1044512 TTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTG 1044571 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || ||| || | || | |||||| || || || || | || || |||||||| | Sbjct 1044572 CTCTTT--ACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAG 1044629 Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750 | || ||||| ||||| || |||||| Sbjct 1044630 TCAAGGTTTTGACAAAAATTTGCATA 1044655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703983975680