Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq1 136 9e-27
seq2 120 7e-22
>seq1
Length=5579133
Score = 136 bits (150), Expect = 9e-27
Identities = 194/271 (72%), Gaps = 4/271 (1%)
Strand=Plus/Minus
Query 206121 AACAAAGGAAAAATATATTTTAAGAAATATATA-AAGTAAGGCTAAAATGTACCAGATAT 206179
|||||| |||| || |||| | ||| || | ||| | | |||||| || || |
Sbjct 3108927 AACAAAAGAAATATGAATTTCGAAAAACATTTCTAAGCACAACCAAAATG---CAAATTT 3108871
Query 206180 TTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCG 206239
| |||||| || || || || ||||| || | || ||||| |||||||| | |
Sbjct 3108870 TCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAGTCCTCTGACACTATTG 3108811
Query 206240 AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTA 206299
| || ||| || || ||||| |||||||||||| || || ||| | ||||
Sbjct 3108810 ATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAACGTCTTA 3108751
Query 206300 TCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359
| ||||| || |||||||| ||||||||| | |||||| | ||||||||| |||| || |
Sbjct 3108750 TTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGATTACAACATCCAAAAGG 3108691
Query 206360 AGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|||| ||||||||||| |||||| | |||||
Sbjct 3108690 AGTCCACTCTTCACCTCGTTTTGCGTCTTCG 3108660
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || | || || ||||| || || | || |||||| ||||||
Sbjct 2794721 CAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGGAATCCTCTGAC 2794662
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| |||||||| || || ||||||||| || || |||
Sbjct 2794661 ACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAACAA 2794602
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | || || ||||||||||||||||| ||||| | ||| | | |||||||| ||
Sbjct 2794601 CGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGATTACAATATC 2794542
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| |||||||| ||||||||| | ||| | | |||||
Sbjct 2794541 CAAAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCG 2794504
Score = 104 bits (114), Expect = 6e-17
Identities = 86/105 (82%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||| | |||||| ||||||||||| ||||| || |||| || || |||| ||||||
Sbjct 3108660 CGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTA 3108719
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| ||||||||| | |||||| || ||||| ||||| |||||||||
Sbjct 3108720 CGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGA 3108764
Score = 96.9 bits (106), Expect = 8e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| || || || || || || || | || || ||| ||||||
Sbjct 3238359 CAGATCTTTGTAAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCTCTGAC 3238300
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| || || ||||| || ||||||||| || || |||
Sbjct 3238299 ACTATTGACAATGTCAAGAGCAAAATCCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 3238240
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||| || || ||||| | || || ||| | |||||| | ||||| ||| ||
Sbjct 3238239 CGTTTGATCTTTGCTGGCAAGCAACTCGAGGACGGACGTACTTTGTCTGATTATAACATC 3238180
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||| ||||||||||| |||||| | |||||
Sbjct 3238179 CAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCG 3238142
Score = 91.5 bits (100), Expect = 3e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||| | |||||| ||||||||||| ||||| || |||| ||||| |||| ||||||
Sbjct 3238142 CGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTA 3238201
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| ||| || || || ||||| || || ||||| | |||||||||
Sbjct 3238202 CGTCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGA 3238246
Score = 91.5 bits (100), Expect = 3e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || | || ||||| || ||||| | || ||||| ||||||
Sbjct 3969012 CAGATTTTCGTCAAGACTTTGACCGGAAAGACTATCACCCTTGAGGTGGAGTCCTCTGAC 3969071
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| || || ||||| || ||||||||| || ||| |||
Sbjct 3969072 ACTATTGACAATGTCAAGAGCAAAATCCAAGACAAGGAAGGAATTCCTCCTGACCAACAA 3969131
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| ||||||||||| |||||||| || || ||||| | ||| | | || |||||| |
Sbjct 3969132 CGTCTTATCTTCGCTGGAAAGCAATTAGAGGATGGCCGTACTCTTTCTGACTACAACATT 3969191
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || |||||||| ||||| | ||| | | |||||
Sbjct 3969192 CAAAAGGAGTCTACCCTTCATTTAGTTCTCCGTCTTCG 3969229
>seq2
Length=4539804
Score = 120 bits (132), Expect = 7e-22
Identities = 155/213 (73%), Gaps = 1/213 (0%)
Strand=Plus/Minus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| |||||| | || || ||||| || || |||||||| || ||||||||| |
Sbjct 1044646 TTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGACACCAT 1044587
Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297
|| |||||| |||||||| || || ||||| ||| || || ||| | ||
Sbjct 1044586 TGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAACGTCT 1044527
Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357
||| || || || ||||| | ||||||||| | ||| | | ||||||||| | || ||
Sbjct 1044526 TATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACATTCAAAA 1044467
Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||||||||||||||||||| | | |||||
Sbjct 1044466 GGAGTCTACTCTTCACCTTGTTCTTCGTCTTCG 1044434
Score = 114 bits (126), Expect = 3e-20
Identities = 154/213 (72%), Gaps = 1/213 (0%)
Strand=Plus/Minus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| |||||| | || || ||||| || || |||||||| || ||||||||| |
Sbjct 1045102 TTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGACACCAT 1045043
Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297
|| |||||| |||||||| || || ||||| ||| || || ||| | ||
Sbjct 1045042 TGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAACGTCT 1044983
Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357
||| || || || ||||| | ||||| ||| | ||| | | ||||||||| | || ||
Sbjct 1044982 TATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAACATTCAAAA 1044923
Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||||||||||||||||||| | | |||||
Sbjct 1044922 GGAGTCTACTCTTCACCTTGTTCTTCGTCTTCG 1044890
Score = 111 bits (122), Expect = 4e-19
Identities = 153/213 (72%), Gaps = 1/213 (0%)
Strand=Plus/Minus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| |||||| | || || ||||| || || |||||||| || ||||||||| |
Sbjct 1045330 TTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGACACCAT 1045271
Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297
|| |||||| |||||||| || || ||||| ||| || || ||| | ||
Sbjct 1045270 TGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAACGTCT 1045211
Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357
||| || || || ||||| | ||||||||| | ||| | | ||||||||| | || ||
Sbjct 1045210 TATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACATTCAAAA 1045151
Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||||||||| || |||||| | | |||||
Sbjct 1045150 GGAGTCTACTCTACATCTTGTTCTTCGTCTTCG 1045118
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || | || ||||| || || || |||||||| ||| ||| ||
Sbjct 1045563 CAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCCGAT 1045504
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || |||||| |||||||| || || ||||| ||| || || |||
Sbjct 1045503 ACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAA 1045444
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| ||||| || || || ||||| | ||||||||| | ||| | | ||||||||| |
Sbjct 1045443 CGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACATT 1045384
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||||||||||||||||||||| | | |||||
Sbjct 1045383 CAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCG 1045346
Score = 105 bits (116), Expect = 2e-17
Identities = 152/213 (71%), Gaps = 1/213 (0%)
Strand=Plus/Minus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| |||||| | || || ||||| || || |||||||| || ||||||||| |
Sbjct 1044874 TTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGACACCAT 1044815
Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297
|| |||||| |||||||| || || ||||| ||| || || ||| | ||
Sbjct 1044814 TGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAACGTCT 1044755
Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357
||| || || || ||||| | ||||| ||| | ||| | | ||||||||| | || ||
Sbjct 1044754 TATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAACATTCAAAA 1044695
Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||||||||| || |||||| | | |||||
Sbjct 1044694 GGAGTCTACTCTACATCTTGTTCTTCGTCTTCG 1044662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181820739431684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |