Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 136 9e-27 seq2 120 7e-22 >seq1 Length=5579133 Score = 136 bits (150), Expect = 9e-27 Identities = 194/271 (72%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 206121 AACAAAGGAAAAATATATTTTAAGAAATATATA-AAGTAAGGCTAAAATGTACCAGATAT 206179 |||||| |||| || |||| | ||| || | ||| | | |||||| || || | Sbjct 3108927 AACAAAAGAAATATGAATTTCGAAAAACATTTCTAAGCACAACCAAAATG---CAAATTT 3108871 Query 206180 TTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCG 206239 | |||||| || || || || ||||| || | || ||||| |||||||| | | Sbjct 3108870 TCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAGTCCTCTGACACTATTG 3108811 Query 206240 AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTA 206299 | || ||| || || ||||| |||||||||||| || || ||| | |||| Sbjct 3108810 ATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCTGATCAACAACGTCTTA 3108751 Query 206300 TCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 | ||||| || |||||||| ||||||||| | |||||| | ||||||||| |||| || | Sbjct 3108750 TTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGATTACAACATCCAAAAGG 3108691 Query 206360 AGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||| ||||||||||| |||||| | ||||| Sbjct 3108690 AGTCCACTCTTCACCTCGTTTTGCGTCTTCG 3108660 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || ||||| || || | || |||||| |||||| Sbjct 2794721 CAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGGAATCCTCTGAC 2794662 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || ||||||||| || || ||| Sbjct 2794661 ACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAACAA 2794602 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || ||||||||||||||||| ||||| | ||| | | |||||||| || Sbjct 2794601 CGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGATTACAATATC 2794542 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||||| ||||||||| | ||| | | ||||| Sbjct 2794541 CAAAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCG 2794504 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | |||||| ||||||||||| ||||| || |||| || || |||| |||||| Sbjct 3108660 CGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTA 3108719 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||| | |||||| || ||||| ||||| ||||||||| Sbjct 3108720 CGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGA 3108764 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || || || | || || ||| |||||| Sbjct 3238359 CAGATCTTTGTAAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCTCTGAC 3238300 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| || ||||||||| || || ||| Sbjct 3238299 ACTATTGACAATGTCAAGAGCAAAATCCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 3238240 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || ||||| | || || ||| | |||||| | ||||| ||| || Sbjct 3238239 CGTTTGATCTTTGCTGGCAAGCAACTCGAGGACGGACGTACTTTGTCTGATTATAACATC 3238180 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| ||||||||||| |||||| | ||||| Sbjct 3238179 CAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCG 3238142 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | |||||| ||||||||||| ||||| || |||| ||||| |||| |||||| Sbjct 3238142 CGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTA 3238201 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||| || || || ||||| || || ||||| | ||||||||| Sbjct 3238202 CGTCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGA 3238246 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || ||||| | || ||||| |||||| Sbjct 3969012 CAGATTTTCGTCAAGACTTTGACCGGAAAGACTATCACCCTTGAGGTGGAGTCCTCTGAC 3969071 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| || ||||||||| || ||| ||| Sbjct 3969072 ACTATTGACAATGTCAAGAGCAAAATCCAAGACAAGGAAGGAATTCCTCCTGACCAACAA 3969131 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| |||||||| || || ||||| | ||| | | || |||||| | Sbjct 3969132 CGTCTTATCTTCGCTGGAAAGCAATTAGAGGATGGCCGTACTCTTTCTGACTACAACATT 3969191 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || |||||||| ||||| | ||| | | ||||| Sbjct 3969192 CAAAAGGAGTCTACCCTTCATTTAGTTCTCCGTCTTCG 3969229 >seq2 Length=4539804 Score = 120 bits (132), Expect = 7e-22 Identities = 155/213 (73%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || || ||||| || || |||||||| || ||||||||| | Sbjct 1044646 TTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGACACCAT 1044587 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || |||||| |||||||| || || ||||| ||| || || ||| | || Sbjct 1044586 TGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAACGTCT 1044527 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || || || ||||| | ||||||||| | ||| | | ||||||||| | || || Sbjct 1044526 TATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACATTCAAAA 1044467 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||||||||||||| | | ||||| Sbjct 1044466 GGAGTCTACTCTTCACCTTGTTCTTCGTCTTCG 1044434 Score = 114 bits (126), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || || ||||| || || |||||||| || ||||||||| | Sbjct 1045102 TTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGACACCAT 1045043 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || |||||| |||||||| || || ||||| ||| || || ||| | || Sbjct 1045042 TGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAACGTCT 1044983 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || || || ||||| | ||||| ||| | ||| | | ||||||||| | || || Sbjct 1044982 TATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAACATTCAAAA 1044923 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||||||||||||| | | ||||| Sbjct 1044922 GGAGTCTACTCTTCACCTTGTTCTTCGTCTTCG 1044890 Score = 111 bits (122), Expect = 4e-19 Identities = 153/213 (72%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || || ||||| || || |||||||| || ||||||||| | Sbjct 1045330 TTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGACACCAT 1045271 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || |||||| |||||||| || || ||||| ||| || || ||| | || Sbjct 1045270 TGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAACGTCT 1045211 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || || || ||||| | ||||||||| | ||| | | ||||||||| | || || Sbjct 1045210 TATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACATTCAAAA 1045151 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || |||||| | | ||||| Sbjct 1045150 GGAGTCTACTCTACATCTTGTTCTTCGTCTTCG 1045118 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || || || |||||||| ||| ||| || Sbjct 1045563 CAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCCGAT 1045504 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| |||||||| || || ||||| ||| || || ||| Sbjct 1045503 ACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAA 1045444 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| || || || ||||| | ||||||||| | ||| | | ||||||||| | Sbjct 1045443 CGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAACATT 1045384 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||||||||||||||||||| | | ||||| Sbjct 1045383 CAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCG 1045346 Score = 105 bits (116), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || || ||||| || || |||||||| || ||||||||| | Sbjct 1044874 TTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCTGACACCAT 1044815 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || |||||| |||||||| || || ||||| ||| || || ||| | || Sbjct 1044814 TGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAACAACGTCT 1044755 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || || || ||||| | ||||| ||| | ||| | | ||||||||| | || || Sbjct 1044754 TATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAACATTCAAAA 1044695 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || |||||| | | ||||| Sbjct 1044694 GGAGTCTACTCTACATCTTGTTCTTCGTCTTCG 1044662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820739431684