Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 >seq2 Length=4539804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||||| | ||||| |||||||||||||| || | ||||| |||||| Sbjct 1045129 AACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTC 1045188 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || ||||| | | | || ||||| |||||||| ||||| |||||||| ||||| Sbjct 1045189 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1045248 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || || | | || | || || | | ||| ||||| | || | ||||| Sbjct 1045249 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1045308 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| ||||| | ||||| ||||| Sbjct 1045309 ACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||||||||| || | ||||| |||||| || || ||||| | | Sbjct 1045373 GACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCA 1045432 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAAT-TTTTTGTTTCAA 132048 | || ||||| |||||||| ||||| |||||||| ||||| ||| || | ||| | Sbjct 1045433 AAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACA 1045492 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 || || | ||||||| | || ||||| | || | || || ||||| | || || Sbjct 1045493 TTG-TCAATGGTATCGGAAGATTCAACTTCCAATGTAATAGTCTTTCCAGTTAATGTCTT 1045551 Query 132109 TATGAAAATCTGCATG 132124 | ||||||||||||| Sbjct 1045552 GACGAAAATCTGCATG 1045567 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||||||||| || | ||||| |||||| || || ||||| | | Sbjct 1044461 GACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCA 1044520 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || ||||| |||||||| ||||| |||||||| ||||| ||| || || | Sbjct 1044521 AAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACG 1044580 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | ||| ||||| | || | ||||||||||||| ||||| Sbjct 1044581 TTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTG 1044640 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 1044641 ACAAAAATTTGCAT 1044654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||||| | ||||| |||||||||||||| || | ||||| ||||| Sbjct 1044673 AACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTC 1044732 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || ||||| | | | || ||||| |||||||| ||||| |||||||| ||||| Sbjct 1044733 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1044792 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || || | | || | || || | | ||| ||||| | || | ||||| Sbjct 1044793 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1044852 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| ||||| | ||||| ||||| Sbjct 1044853 ACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||||||||| || | ||||| ||||| || || ||||| | | Sbjct 1044917 GACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCA 1044976 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || ||||| |||||||| ||||| |||||||| ||||| ||| || || | Sbjct 1044977 AAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACG 1045036 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | ||| ||||| | || | ||||||||||||| ||||| Sbjct 1045037 TTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTG 1045096 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 1045097 ACAAAAATTTGCAT 1045110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611176169440