Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 2e-17
seq2 98.7 9e-16
>seq1
Length=5579133
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| ||||| || |||||||| | | || || | || |||| |||||| || |||||
Sbjct 2794533 CTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCCAACTGCTTTCCGGCAAA 2794592
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| || || || || | ||||| | ||||||||| ||||| ||| | | |
Sbjct 2794593 AATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTTACTCTTGACATT 2794652
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| ||||||||||| | || || |||||||| |||||||| || ||
Sbjct 2794653 GTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGAC 2794712
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 2794713 AAAAATCTGCAT 2794724
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/196 (69%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||||||||| ||||||||||| | ||| || || | || || | ||||||||| || ||
Sbjct 3108689 CTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATCTTCTAACTGCTTACCAGCGAA 3108748
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | || || || || | ||||| | || ||||| ||| || ||| | | |
Sbjct 3108749 AATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTGCTCTTGACATT 3108808
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || |||||||| | || ||||| |||||||| | ||||| ||
Sbjct 3108809 ATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGAC 3108868
Query 35725 AAATATCTGCATTCTG 35740
|| || |||||| ||
Sbjct 3108869 GAAAATTTGCATTTTG 3108884
>seq2
Length=4539804
Score = 98.7 bits (108), Expect = 9e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 35533 ATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTG 35592
||||| ||| ||||||||||||||||||||| | | || || |||| || || ||
Sbjct 1044679 ATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTG 1044738
Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652
|||||| ||||| || | || || || || | ||||| || ||||| ||| |||||
Sbjct 1044739 CTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTT 1044798
Query 35653 TTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
||| | | | | ||||| || || || |||| || || |||||||| ||
Sbjct 1044799 GCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGT 1044858
Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736
||| ||||| ||||| || |||||
Sbjct 1044859 CAAGGTTTTGACAAAAATTTGCAT 1044882
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||||||||||||||||||||| | | || || |||| || || |||||||| |||||
Sbjct 1044919 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAA 1044978
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | || || || || | ||||| || ||||| ||| ||||| ||| | |
Sbjct 1044979 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTT 1045038
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || || || |||| || || |||||||| ||||| ||||| ||
Sbjct 1045039 ATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGAC 1045098
Query 35725 AAATATCTGCAT 35736
||| || |||||
Sbjct 1045099 AAAAATTTGCAT 1045110
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 35533 ATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTG 35592
||||| ||| ||||||||||||||||||||| | | || || | || || || ||
Sbjct 1045135 ATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTG 1045194
Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652
|||||| ||||| || | || || || || | ||||| || ||||| ||| |||||
Sbjct 1045195 CTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTT 1045254
Query 35653 TTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
||| | | | | ||||| || || || |||| || || |||||||| ||
Sbjct 1045255 GCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGT 1045314
Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736
||| ||||| ||||| || |||||
Sbjct 1045315 CAAGGTTTTGACAAAAATTTGCAT 1045338
Score = 89.7 bits (98), Expect = 5e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||||||||||||||||||||| | | || || | || || || |||||||| |||||
Sbjct 1044463 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAA 1044522
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | || || || || | ||||| || ||||| ||| ||||| ||| | |
Sbjct 1044523 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTT 1044582
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || || || |||| || || |||||||| ||||| ||||| ||
Sbjct 1044583 ATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGAC 1044642
Query 35725 AAATATCTGCAT 35736
||| || |||||
Sbjct 1044643 AAAAATTTGCAT 1044654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793577460320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |