Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq2 98.7 9e-16 >seq1 Length=5579133 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||| || |||||||| | | || || | || |||| |||||| || ||||| Sbjct 2794533 CTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCCAACTGCTTTCCGGCAAA 2794592 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| || || || || | ||||| | ||||||||| ||||| ||| | | | Sbjct 2794593 AATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTTACTCTTGACATT 2794652 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| ||||||||||| | || || |||||||| |||||||| || || Sbjct 2794653 GTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGAC 2794712 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 2794713 AAAAATCTGCAT 2794724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| ||||||||||| | ||| || || | || || | ||||||||| || || Sbjct 3108689 CTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATCTTCTAACTGCTTACCAGCGAA 3108748 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || || || || | ||||| | || ||||| ||| || ||| | | | Sbjct 3108749 AATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTGCTCTTGACATT 3108808 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || |||||||| | || ||||| |||||||| | ||||| || Sbjct 3108809 ATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGAC 3108868 Query 35725 AAATATCTGCATTCTG 35740 || || |||||| || Sbjct 3108869 GAAAATTTGCATTTTG 3108884 >seq2 Length=4539804 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 35533 ATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTG 35592 ||||| ||| ||||||||||||||||||||| | | || || |||| || || || Sbjct 1044679 ATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTG 1044738 Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||||| ||||| || | || || || || | ||||| || ||||| ||| ||||| Sbjct 1044739 CTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTT 1044798 Query 35653 TTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 ||| | | | | ||||| || || || |||| || || |||||||| || Sbjct 1044799 GCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGT 1044858 Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736 ||| ||||| ||||| || ||||| Sbjct 1044859 CAAGGTTTTGACAAAAATTTGCAT 1044882 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||||||||| | | || || |||| || || |||||||| ||||| Sbjct 1044919 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAA 1044978 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || || || || | ||||| || ||||| ||| ||||| ||| | | Sbjct 1044979 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTT 1045038 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || || |||| || || |||||||| ||||| ||||| || Sbjct 1045039 ATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGAC 1045098 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 1045099 AAAAATTTGCAT 1045110 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 35533 ATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTG 35592 ||||| ||| ||||||||||||||||||||| | | || || | || || || || Sbjct 1045135 ATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTG 1045194 Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||||| ||||| || | || || || || | ||||| || ||||| ||| ||||| Sbjct 1045195 CTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTT 1045254 Query 35653 TTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 ||| | | | | ||||| || || || |||| || || |||||||| || Sbjct 1045255 GCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGT 1045314 Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736 ||| ||||| ||||| || ||||| Sbjct 1045315 CAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||||||||| | | || || | || || || |||||||| ||||| Sbjct 1044463 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAA 1044522 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || || || || | ||||| || ||||| ||| ||||| ||| | | Sbjct 1044523 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTT 1044582 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || || |||| || || |||||||| ||||| ||||| || Sbjct 1044583 ATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGAC 1044642 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 1044643 AAAAATTTGCAT 1044654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793577460320