Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1 136 4e-27 seq2 116 4e-21 >seq1 Length=5579133 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || ||||| |||||||| || ||||| |||||||| |||||||| || | ||| | | | Sbjct 3108663 AGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAG-TACG 3108721 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || | ||| || || || ||||| | ||| || ||||| || || || ||||| Sbjct 3108722 TCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 3108781 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 ||| ||||| ||||| ||||| || | ||||| || || ||||| || || || Sbjct 3108782 TTTGTCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGT 3108841 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTG 134723 ||| || ||||| || | ||||| |||||||||||||||||| || || Sbjct 3108842 AATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTTGGTTGTG 3108890 Score = 113 bits (124), Expect = 5e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||| || ||||| || ||||| || || || || || || | ||| Sbjct 2794521 GTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCCAACTG 2794580 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||||||||| || || ||||| || || || ||||| || || ||||| || Sbjct 2794581 CTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTT 2794640 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | ||||| || |||||||| || || || || |||||||| || Sbjct 2794641 ACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTACCAGT 2794700 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || || ||||| ||||| || Sbjct 2794701 CAAAGTCTTGACAAAAATCTGCATCTT 2794727 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || |||||||||||||||||||| || || | || || | || Sbjct 3969211 TGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCCTCTAATTGC 3969152 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || || | ||| || || || || || || ||||| || ||||| ||||| Sbjct 3969151 TTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGGATTTTG 3969092 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| ||| | ||||| || || ||||| || || || || || || ||||| Sbjct 3969091 CTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTTCCGGTC 3969032 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 ||||| || |||||||| ||||| Sbjct 3969031 AAAGTCTTGACGAAAATCTGCAT 3969009 >seq2 Length=4539804 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || ||||| || || ||||||||||||||||| || || || | ||| || Sbjct 1044674 ACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCA 1044733 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || |||||||| | ||| || ||||| || || |||||||| || || ||| Sbjct 1044734 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1044793 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | ||||| || || || || || | |||||||||||| Sbjct 1044794 ATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTA 1044853 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||||||||| Sbjct 1044854 CCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||||||||||||||| || || || | ||| || Sbjct 1044902 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCA 1044961 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || |||||||| | ||| || ||||| || || |||||||| || || ||| Sbjct 1044962 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1045021 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | ||||| || || || || || | |||||||||||| Sbjct 1045022 ATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTA 1045081 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||||||||| Sbjct 1045082 CCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||||||||||||||| || || || | || || Sbjct 1044446 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCA 1044505 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || |||||||| | ||| || ||||| || || |||||||| || || ||| Sbjct 1044506 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1044565 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | ||||| || || || || || | |||||||||||| Sbjct 1044566 ATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTA 1044625 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||||||||| Sbjct 1044626 CCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || ||||| || || ||||||||||||||||| || || || | || || Sbjct 1045130 ACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCA 1045189 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || |||||||| | ||| || ||||| || || |||||||| || || ||| Sbjct 1045190 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1045249 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | ||||| || || || || || | |||||||||||| Sbjct 1045250 ATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTA 1045309 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||||||||| Sbjct 1045310 CCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||||||||||||||| || || || | || || Sbjct 1045358 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCA 1045417 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || |||||||| | ||| || ||||| || || |||||||| || || ||| Sbjct 1045418 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1045477 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | || ||||| ||||| || || | ||||| || || Sbjct 1045478 ATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAATAGTCTTT 1045537 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || |||||||| ||||| Sbjct 1045538 CCAGTTAATGTCTTGACGAAAATCTGCAT 1045566 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 21443 TTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCATAAAATTAAAAGGATTGC 21502 ||||||||||||||||||||||| ||| | || || | ||| |||| ||||||||| Sbjct 3722835 TTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGG 3722776 Query 21503 TGGCGTAAAAACACCTTTCTTCGTTCAATTCCACGCACAAACGATCCGCCACGAATTCAA 21562 | ||| | | || | || | | ||| | || |||||||||| || || ||||||| Sbjct 3722775 TTACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACAAACGATCAGCAACAAATTCAA 3722716 Query 21563 TGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCGACCGGTAGCGCTTCGGTGA 21622 | || |||||||| || |||||| || | |||| || || || || || |||| Sbjct 3722715 TATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGA 3722656 Query 21623 AAAACTCCTTCTCGATAGCCACCGCTTC 21650 | | || ||||| ||| | || ||||| Sbjct 3722655 AGTATTCTTTCTCAATATCAACAGCTTC 3722628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398374730080