Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq1 136 4e-27
seq2 116 4e-21
>seq1
Length=5579133
Score = 136 bits (150), Expect = 4e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554
|| ||||| |||||||| || ||||| |||||||| |||||||| || | ||| | | |
Sbjct 3108663 AGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAG-TACG 3108721
Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614
|| || | ||| || || || ||||| | ||| || ||||| || || || |||||
Sbjct 3108722 TCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 3108781
Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674
||| ||||| ||||| ||||| || | ||||| || || ||||| || || ||
Sbjct 3108782 TTTGTCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGT 3108841
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTG 134723
||| || ||||| || | ||||| |||||||||||||||||| || ||
Sbjct 3108842 AATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTTGGTTGTG 3108890
Score = 113 bits (124), Expect = 5e-20
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || ||||| || ||||| || ||||| || || || || || || | |||
Sbjct 2794521 GTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCCAACTG 2794580
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
|| || ||||||||||| || || ||||| || || || ||||| || || ||||| ||
Sbjct 2794581 CTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTT 2794640
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
||||| ||| | ||||| || |||||||| || || || || |||||||| ||
Sbjct 2794641 ACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTACCAGT 2794700
Query 134690 TAAAGTTTTAACGAAAATTTGCATTTT 134716
||||| || || ||||| ||||| ||
Sbjct 2794701 CAAAGTCTTGACAAAAATCTGCATCTT 2794727
Score = 96.9 bits (106), Expect = 4e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570
|| || || || |||||||||||||||||||| || || | || || | ||
Sbjct 3969211 TGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCCTCTAATTGC 3969152
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || || || || | ||| || || || || || || ||||| || ||||| |||||
Sbjct 3969151 TTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGGATTTTG 3969092
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
||||| ||| | ||||| || || ||||| || || || || || || |||||
Sbjct 3969091 CTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTTCCGGTC 3969032
Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713
||||| || |||||||| |||||
Sbjct 3969031 AAAGTCTTGACGAAAATCTGCAT 3969009
>seq2
Length=4539804
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| || ||||| || || ||||||||||||||||| || || || | ||| ||
Sbjct 1044674 ACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCA 1044733
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| || || || |||||||| | ||| || ||||| || || |||||||| || || |||
Sbjct 1044734 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1044793
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || || | ||||| || || || || || | ||||||||||||
Sbjct 1044794 ATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTA 1044853
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || ||||| || |||||||||||
Sbjct 1044854 CCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || || || ||||||||||||||||| || || || | ||| ||
Sbjct 1044902 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCA 1044961
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| || || || |||||||| | ||| || ||||| || || |||||||| || || |||
Sbjct 1044962 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1045021
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || || | ||||| || || || || || | ||||||||||||
Sbjct 1045022 ATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTA 1045081
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || ||||| || |||||||||||
Sbjct 1045082 CCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || || || ||||||||||||||||| || || || | || ||
Sbjct 1044446 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCA 1044505
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| || || || |||||||| | ||| || ||||| || || |||||||| || || |||
Sbjct 1044506 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1044565
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || || | ||||| || || || || || | ||||||||||||
Sbjct 1044566 ATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTA 1044625
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || ||||| || |||||||||||
Sbjct 1044626 CCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| || ||||| || || ||||||||||||||||| || || || | || ||
Sbjct 1045130 ACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCA 1045189
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| || || || |||||||| | ||| || ||||| || || |||||||| || || |||
Sbjct 1045190 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1045249
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || || | ||||| || || || || || | ||||||||||||
Sbjct 1045250 ATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTA 1045309
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || ||||| || |||||||||||
Sbjct 1045310 CCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || || || ||||||||||||||||| || || || | || ||
Sbjct 1045358 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCA 1045417
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| || || || |||||||| | ||| || ||||| || || |||||||| || || |||
Sbjct 1045418 AGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGA 1045477
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || ||| | || ||||| ||||| || || | ||||| || ||
Sbjct 1045478 ATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAATAGTCTTT 1045537
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| || || |||||||| |||||
Sbjct 1045538 CCAGTTAATGTCTTGACGAAAATCTGCAT 1045566
Score = 105 bits (116), Expect = 7e-18
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 21443 TTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCATAAAATTAAAAGGATTGC 21502
||||||||||||||||||||||| ||| | || || | ||| |||| |||||||||
Sbjct 3722835 TTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGG 3722776
Query 21503 TGGCGTAAAAACACCTTTCTTCGTTCAATTCCACGCACAAACGATCCGCCACGAATTCAA 21562
| ||| | | || | || | | ||| | || |||||||||| || || |||||||
Sbjct 3722775 TTACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACAAACGATCAGCAACAAATTCAA 3722716
Query 21563 TGTATTGACACATGCTGTCGCAATTCATGCCCAACAGATCGACCGGTAGCGCTTCGGTGA 21622
| || |||||||| || |||||| || | |||| || || || || || ||||
Sbjct 3722715 TATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGA 3722656
Query 21623 AAAACTCCTTCTCGATAGCCACCGCTTC 21650
| | || ||||| ||| | || |||||
Sbjct 3722655 AGTATTCTTTCTCAATATCAACAGCTTC 3722628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505398374730080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |