Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 331 1e-85 seq2 250 3e-61 >seq1 Length=5579133 Score = 331 bits (366), Expect = 1e-85 Identities = 1351/2109 (64%), Gaps = 29/2109 (1%) Strand=Plus/Minus Query 68404 GTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTT 68463 ||||| ||||||||||| || || || ||||| |||| || || || |||||||| Sbjct 4229516 GTACGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTA 4229457 Query 68464 GTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATG 68523 || | ||| || ||||| | ||||| |||| ||| |||||| ||| Sbjct 4229456 GTAATTTTTCCGTAGGAAGGATCCTTCAAGTGAATGTTCAAACTTTGGGATTGATCAATG 4229397 Query 68524 AAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTC 68583 || | || | || || || | |||| | |||||||| ||| ||||| | || Sbjct 4229396 AATGGGCCACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337 Query 68584 TTAAAAATCTGTTTGATATCATCTGGAAGGCTCGTATT---TTGAATGGATCCACCATCG 68640 || ||| | || | || | |||| | | | ||| ||||||||| || | Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAA-G 4229278 Query 68641 GATAT-AATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAG 68699 ||| || | | ||||| || || ||||||||||| | | ||| | | | | | Sbjct 4229277 CATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAA 4229218 Query 68700 GAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACT 68759 || ||||| || ||||| ||||| ||||| | || | || ||| || ||| Sbjct 4229217 CAGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGA 4229158 Query 68760 GGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCAT 68819 |||||||| || | | | ||||| || || ||||||| ||||| ||||| ||||| Sbjct 4229157 AGTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCAT 4229098 Query 68820 AGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTT 68879 ||||| || || ||| ||| | || || ||| | || || || || | | Sbjct 4229097 TGGTGCTACTAACAAAGAATTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGC 4229038 Query 68880 CCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACT 68939 ||||||||||||||| | || ||| ||||| | || || |||| ||| || | Sbjct 4229037 CCAATCCCAAAGATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACCCTGGGA 4228978 Query 68940 TGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGC 68999 |||| ||||| | ||| | ||||| | || || | || | || ||| || Sbjct 4228977 TGCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGAGGC 4228918 Query 69000 CTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTA 69058 ||| | || ||| |||||||||||||| || | | || || | |||| || || Sbjct 4228917 CTCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTG-GCACCTG 4228859 Query 69059 GACTATCGAATGGATAATGTAAAA-GAATAAATGCATCTGCCAATCCCTGAACCCCAATA 69117 | |||||||| || | | | ||| ||| ||||| || | || ||||| || | | Sbjct 4228858 CAGATTCGAATGGTAAACGAAGAGCGAAGAAA-GCATCGGCAAGACCTTGAACACCCAAA 4228800 Query 69118 CCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATA 69177 || | || | ||| | | |||| || |||||| |||| ||||||||| |||| Sbjct 4228799 CCAACGGGACGATGGCGCATATTGCTACGGCGAGCTTCAGGAACAGGATAATAGTTAACG 4228740 Query 69178 TCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAA 69237 || ||||| || || || || || || || || || || || | || || | ||| Sbjct 4228739 TCGATAATCTTGTTGAGGTTACGAGTAACGACCTTCACGACATCGTGAAGCTTTTGGAAA 4228680 Query 69238 TCAAATCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCT 69297 | | ||| ||| ||| ||| | || || || || || || |||||||| || Sbjct 4228679 TTGTACTTTCCGTCTTTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAAACAGCA 4228620 Query 69298 ACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTC 69357 || || | || | | |||| | ||||| ||||| || || || ||||| Sbjct 4228619 ACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGAATAGTA 4228560 Query 69358 CCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTA 69417 || | ||| | |||||| ||| ||| || | ||||| || | || || ||| || Sbjct 4228559 CCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACATGAAAGGATTA 4228500 Query 69418 CCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATT--ACG- 69474 |||||||||| || |||| | ||| | | |||||| |||| || | ||| Sbjct 4228499 CCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTAATGAACGA 4228440 Query 69475 -GTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCA 69533 | | ||| ||||| || ||||| | | || || | || || || ||||| Sbjct 4228439 CGACC----ACGGTTCTCCTTCTCATACTTTTCGTAGAGGGCAACAAACTCGTCACCCCA 4228384 Query 69534 AACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT 69593 |||||| |||| || ||| ||||| || || | || | ||| || | | | Sbjct 4228383 AACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTGCTCGTTACGTTC 4228324 Query 69594 AACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTAT 69652 ||| |||| |||||| | || |||||||| | || ||| || | || | | | Sbjct 4228323 AACACGTTGCATAAACAAGTCAGGAATCCACAAGGC-ATAGAACATTTCGCGTGCGCGGA 4228265 Query 69653 TTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATG 69712 || || || || | | ||| ||| || | ||| ||||||| ||| | |||||| | Sbjct 4228264 AATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAG 4228205 Query 69713 GTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGG 69772 | || | ||| || | | | || || || ||||| ||||| || || | || | | Sbjct 4228204 GCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAG 4228145 Query 69773 CAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAG 69832 | ||||| || || || | | ||| || | ||| || || || ||||||| ||||||| Sbjct 4228144 CTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAGTTCCAG 4228085 Query 69833 AAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTT 69892 |||||| || |||| | ||| || |||| | ||| || || || || | | Sbjct 4228084 CAATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCT 4228025 Query 69893 TAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA 69952 | ||||| | |||||| || | |||||| || || || || || || ||| ||| Sbjct 4228024 TGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCA 4227965 Query 69953 TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAG 70012 | ||| || ||||| ||| | ||| || | ||| || ||||| || | || | Sbjct 4227964 TCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTG 4227905 Query 70013 GAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTA 70072 | || || || || || | || ||| | || |||||||||||||||||| | ||| | Sbjct 4227904 GTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAGCTTCAA 4227845 Query 70073 TATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACC 70131 | ||| ||| | || || || | ||||||||||| | |||||||||||| || || | Sbjct 4227844 TGTCCTCACCG-TGGATACCAACGGCGACACGCATAATCATATGCTGAGGGCGCTCAGCA 4227786 Query 70132 GTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTG 70191 ||| | || ||| | || || || | ||| || || ||||| | ||| Sbjct 4227785 ACTTTGCCGTCGATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAGCCAAAGAAATTG 4227726 Query 70192 TATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACT 70251 || | || || | ||||| || ||| || || || || ||||| | ||| | || Sbjct 4227725 TAAGTGAAATCACGATCGTATATGATAGCACTATCTAATTCGTCCTTGTGTTTCATTACG 4227666 Query 70252 ATATCCATAACAGTAGGT--GAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACAT 70309 ||||| | | | || ||||| || || | | || | |||| ||||| |||| Sbjct 4227665 ATATC--GTAGATTTTGTCAGAGATCATGGGGGCAGGCTTGTCTGTTTTGGGATTTACAT 4227608 Query 70310 AGT--TGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATT 70367 ||| ||| | | || | ||| ||| | || | |||| ||| || || || Sbjct 4227607 AGTCATGA--AGCTGTTGAACGACAGTTGAAAACACCTTCTCGGTTTGCTTATGCAAGTT 4227550 Query 70368 TGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGC 70427 || | || ||||| || || | ||||||||| |||||||| | |||||| ||| || Sbjct 4227549 GGAAACAGCAATTCTAGCAGCCAAAATAGCATAATCAGGATGCTTTGTAGTCATAGTCGC 4227490 Query 70428 TGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTG 70487 || |||| |||||||| |||| ||||| ||||| ||||| ||| ||| | || Sbjct 4227489 GGCAGTTTCAGCAGCTAAATTATCCAATTCAATAGTGGTAACACCGGGATACACACCAGA 4227430 Query 70488 AATAACTTT 70496 ||| ||||| Sbjct 4227429 AATGACTTT 4227421 >seq2 Length=4539804 Score = 250 bits (276), Expect = 3e-61 Identities = 592/893 (66%), Gaps = 6/893 (1%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 |||||||| || ||||||| ||| ||| || || || ||||| ||||| ||| Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAAT 39430 | || || ||||| ||||||||||| || ||||| ||| | ||||| | || | | Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG 3722753 Query 39431 CCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAA 39490 || || | | ||| | ||| ||||||||||| || || ||||| || | Sbjct 3722752 CCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTA 3722693 Query 39491 TTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACG 39550 ||||| || | || |||| || ||||| ||||| | | ||||| || || || || Sbjct 3722692 TTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACA 3722633 Query 39551 GCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAAC 39610 || || || || | | || |||| | ||| ||| ||||| ||||| Sbjct 3722632 GCTTCAACAATAATGGCTTCAACAACCTTGCGGCCTGGTCTGTGCTTCAAATGACTAAAC 3722573 Query 39611 ATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT 39670 || || ||||| ||||| || || |||||||| | || ||| ||||| || ||||| Sbjct 3722572 ATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAA 3722513 Query 39671 GTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAA 39730 || || |||||||| || ||||| || || |||||||| || | ||||| ||||||||| Sbjct 3722512 GTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAA 3722453 Query 39731 AAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTA---TCA 39787 |||||||| |||||||| || ||||| ||||| | | | | || | | | ||| Sbjct 3722452 AAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTTCA 3722393 Query 39788 TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 | || ||||| | ||||| | ||||| ||| | | || ||||||| ||| Sbjct 3722392 TCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAATA 3722333 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 |||| || || |||||||| | | || || |||||||| | || || Sbjct 3722332 GCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCAAAAGTGAG 3722273 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 || | || || || || ||||||||| || || || || |||| ||| | |||||| Sbjct 3722272 TAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTTCA 3722213 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | || || || || || | || | || | ||| ||||| || || ||||| Sbjct 3722212 GGGATCTGAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCTGAC 3722153 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA---TTTA 40084 || || ||| | || | |||| |||||| || |||||| | | || ||| Sbjct 3722152 GCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAACTTGTTA 3722093 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 | ||| ||| | ||||| || | ||| | ||| ||||| |||||||| || || || Sbjct 3722092 TCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTTCA 3722033 Query 40145 GCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||||| ||||| | | ||| || || |||| | |||||||| | |||||| Sbjct 3722032 GCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908765654560