Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq2 100 6e-16 >seq2 Length=4539804 Score = 100 bits (110), Expect = 6e-16 Identities = 169/239 (71%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 332037 AATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACA 332096 || ||| |||||| ||||| | ||| |||||| | | || || |||||||| ||| Sbjct 3614079 AAAGCAGCATCTTTTTCGATGTATTTCTTGTATTCAGCCAAAGTAGTAGCACCAAT-ACA 3614137 Query 332097 C-GAATCTCACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCATT 332155 ||| || |||||||| ||| |||||| |||| |||| |||||| ||| | Sbjct 3614138 GTGAAGCTTACCACGTGCAAGCATTGGCTTCAGCAAATTGGCAGCGTCCATGCCACCTTC 3614197 Query 332156 ACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGT---ATT 332212 || ||||||| || || | | || ||| |||||||| | ||| | |||| | | | Sbjct 3614198 ACCACCGGAACCTGCGCCCATTAAAAGATGCATTTCATCTACGAATAAAATAATGGGAGT 3614257 Query 332213 TTCACGTTTCTTTAG-TTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGA 332270 ||||| |||||| | |||||||| | | | ||| || |||||||||||||||||| Sbjct 3614258 TTCAC-TTTCTTCAACTTCTTTTAAAACAGATTTGATACGCTCTTCAAATTCACCACGA 3614315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113830342916192