Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq2 196 4e-45
seq1 118 8e-22
>seq2
Length=4539804
Score = 196 bits (216), Expect = 4e-45
Identities = 566/863 (66%), Gaps = 15/863 (2%)
Strand=Plus/Plus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
||||| ||||||||||| | ||||| || || |||||| | ||||| || || | ||
Sbjct 3721980 TTTGTTTTGTTTCCAATTAAGTATCACGAAATTTGGCAATTCTACAAGAAGGCTGAAGCA 3722039
Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATT-GGATTGCA-- 43816
|| |||||||| || || ||| ||||| | | |||||||| | ||| |||| ||
Sbjct 3722040 TCTTTTTGGACTGCTGAGGAAATTGATCTTTCGAAAGACTTGGTTGATTGGGATAACAAG 3722099
Query 43817 TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGAC 43876
||||| | | ||| | ||||| || || | || | ||| |||||| ||
Sbjct 3722100 TTAAATGCTGATGAACGTTACTTTATTTCCACTGTACTCGCCTATTTCGCTGCGTCAGAT 3722159
Query 43877 GGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC-AAGAAGTTCAATTACCAGAAGC 43935
|| || || ||||| ||| | | | |||| || |||||||| | || |||||
Sbjct 3722160 GGTATTGTTAATGAGAATCT-TCTCGAGCGTTTCAGCTCTGAAGTTCAGATCCCTGAAGC 3722218
Query 43936 ACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCT 43995
|| ||| ||||||| || |||||| || ||||||||||| || || | ||| ||
Sbjct 3722219 TCGTTGTGTTTATGGTTTCCAAATTATGATTGAAAATATTCACTCTGAGACCTACTCACT 3722278
Query 43996 TCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA 44055
| || | ||||| ||||| || | || || || || || |||| ||
Sbjct 3722279 TTTGCTTGATACATACATTCGTGAACCTAAGGAAAAACAGCGTCATTTCGATGCTATTTT 3722338
Query 44056 AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA 44115
|||| | | | ||||| ||||| | ||||| ||| ||||| ||| | ||
Sbjct 3722339 AACAATGGGTTCTATTAAGGCCAAAGCCAAGTGGGCTCTTCGTTGGATTAATGATGAAGA 3722398
Query 44116 TT---CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172
|| | | || | || | || || ||||| | ||| ||||| || |||||||| ||
Sbjct 3722399 TTCCACCTATGCAATTCGTTTGGTTGCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTGG 3722458
Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232
||||||||| | || |||||| | |||||||| || | |||||||| | || |||||
Sbjct 3722459 ATCGTTTGCCTCTATTTTTTGGCTTAAGAAACGTGGACTTATGCCTGGTCTTACTTTTTC 3722518
Query 44233 AAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGG 44292
||||| || || |||||||||| || | || ||| ||||| || ||| | || |
Sbjct 3722519 CAATGAATTGATTTGTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTTTGATGTTTAG 3722578
Query 44293 --ATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCA 44350
|| | || | | || || | | ||| || || ||| |||| || ||
Sbjct 3722579 TCATTTGAAGCACA-GACCAGGC----CGCAAGGTTGTTGAAGCCATTATTGTTGAAGCT 3722633
Query 44351 GTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT 44410
|| | || || |||||| | || || | || || | | | | || ||||||
Sbjct 3722634 GTTGATATTGAGAAAGAATACTTCACGGACGCTCTTCCCGTTAGTCTGCTTGGTATGAAT 3722693
Query 44411 GAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGT 44470
| ||||||| || |||||||||| |||| |||||||| | | | ||||
Sbjct 3722694 AAGGATTTGATGTGTCAGTATATTGAATTTGTTGCTGATCGTTTGTTGGTTGCTTTGGGC 3722753
Query 44471 TGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAA 44530
|| || |||||| ||| || || || ||||| ||||| ||||| || || | |
Sbjct 3722754 AATGACAAGTACTATAACGTAACCAATCCTTTCGATTTCATGGAGAATATCTCTTTAGCA 3722813
Query 44531 GGCAAAACAAACTTTTTTGAAAA 44553
|| |||||||| || ||||||||
Sbjct 3722814 GGAAAAACAAATTTCTTTGAAAA 3722836
>seq1
Length=5579133
Score = 118 bits (130), Expect = 8e-22
Identities = 448/692 (65%), Gaps = 22/692 (3%)
Strand=Plus/Minus
Query 19234 GACATGCAAATTGGAGGA-TTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGT 19292
|||||| ||||| || |||| | | ||||| || || || ||| |||||||||
Sbjct 4720315 GACATGGGCATTGGTGGTCTTGACTCA-GAGTTCAGTGCTATTTTCCGTCGAGCATTTGC 4720257
Query 19293 GTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACT 19352
|| ||| | ||| || | | | || || | |||| ||| |||||| || |
Sbjct 4720256 CTCTCGTCTCTTTCCTCCTGGCATGGTTGAAAAGCTGGGTATTAATCATGTTAAGGGTAT 4720197
Query 19353 TTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATT 19412
| | | ||||| || || ||| ||| || ||||||||||| || || || ||||| |
Sbjct 4720196 TCTCTTATATGGCCCTCCAGGTACTGGTAAGACATTAATTGCTCGACAAATTGGTAAAAT 4720137
Query 19413 ACTTACAAAACAACCT---CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGT 19469
|| ||| | | || ||||| || |||||||||||||| |||| ||||| ||
Sbjct 4720136 GCT---AAATGCCCGTGAACCGAAAATCGTTAATGGTCCTGAAATTCTAAACAAATACGT 4720080
Query 19470 AGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAA---GAAGAACAAAA 19526
|||||| |||||||| || || || || || || |||||| || | | |
Sbjct 4720079 CGGTCAAAGTGAAGAAAACGTTCGTAAATTATTCGCCGATGCTGAACGTGAGTATCGCGA 4720020
Query 19527 ACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTG 19586
|| || | | | | |||| || ||||| || | |||||||| || || || ||
Sbjct 4720019 TCGCGGAGAG-GAATCGGGTCTT--CATATTATTATCTTCGATGAATTAGATGCCATATG 4719963
Query 19587 TAAGCAAAGAG---GTTCTGGTGTAAAT---GGAGTACATGACACTGTTGTCAATCAACT 19640
||| | |||| ||||||||| || || || || || || ||||| ||
Sbjct 4719962 TAAAAAGAGAGGAAGTTCTGGTGGTGATACAGGTGTTGGCGATCAGGTCGTTAATCAGCT 4719903
Query 19641 CCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700
|| | || | || || ||| | |||||||||||||| | |||||||| ||||||||
Sbjct 4719902 TTTGGCTAAGATGGATGGCGTTGATCAACTGAATAATATCCTTGTTATTGGTATGACTAA 4719843
Query 19701 TAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGA 19760
||| || | || || || | || || || ||||| | || | | || ||
Sbjct 4719842 CAGAAAAGACATGATCGATGAAGCTCTTTTGCGTCCAGGTCGTCTTGAGGTTCATATGGA 4719783
Query 19761 AA-TTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCA 19819
|| || |||| || |||||| || ||| || | ||| | || || ||||| || |
Sbjct 4719782 AATTTCACTT-CCAGATGAACACGGCCGTTTGCAGATTCTGAAAATCCATACGTCCCGTA 4719724
Query 19820 TGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCA 19879
|| |||| ||||| | | ||||| || | ||||| | ||| | ||| |
Sbjct 4719723 TGGCTTCAAATGGTATTTTAGAGAATGATGTTGACATGGAAGAGCTAGCATCTCTTACTA 4719664
Query 19880 AAAACTATAGCGGCGCAGAACTTGAGGGATTA 19911
|||||| | || || ||| ||| ||||||
Sbjct 4719663 AAAACTTTTCTGGTGCTGAAATTGCTGGATTA 4719632
Score = 105 bits (116), Expect = 5e-18
Identities = 284/435 (65%), Gaps = 27/435 (6%)
Strand=Plus/Plus
Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925
||||| || |||||| | ||||| ||||| | | ||||||| ||||| |||||| |
Sbjct 3725123 GGTGACCTCGGTCCTATATATGGTTTTCAATGGAGACATTTCGGAGCGCAATATGTTGAT 3725182
Query 40926 ATGTACTCTGATTATACCAATAAAGGAATGGATCAATT---ACAGTGCGTTATAGATACG 40982
| |||| ||||||||||||||| ||||||| | ||| |||||| |||
Sbjct 3725183 TGCGATACTGACTATACCAATAAAGGAGTGGATCAGCTGGCTCAG---GTTATATCTACC 3725239
Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042
| |||| | || || ||| |||||||| | | || ||||||||| | |
Sbjct 3725240 CTCAAATTAAACCCTTATGACCGTCGTATAATTCTTTCAGCTTGGAACCCATTAGCTATT 3725299
Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGT---------TTGC 41093
| | ||||| || |||||||| ||| | || || |||||||| || ||||
Sbjct 3725300 CCTGAAATGGCTTTACCACCTTGCCATATATTTTGCCAGTTTTATGTCAGTGAGCCTTGC 3725359
Query 41094 AA---TGGTG---------AACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGA 41141
|| ||| | |||| || || ||||||| | || | ||||||||
Sbjct 3725360 AAGCCTGGGGGAAAGCCCCAACTTTCTAGTATGATGTATCAGCGCTCTGCCGACATGGGG 3725419
Query 41142 CTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTT 41201
|| || || || |||||||| || |||| |||| | || ||||||| || ||| |
Sbjct 3725420 CTTGGAGTTCCTTTTAACATTGCTTCTTATTCTCTCTTAACACATATGATAGCTCACATG 3725479
Query 41202 ACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAAT 41261
| | || ||| |||||||||||| | || ||| | ||||| |||| | ||
Sbjct 3725480 TGCGGCTATGAAGCTGCCGAATTTGTTCACGTAATGGGTGATTGTCATATATACAATGAT 3725539
Query 41262 CACATAGAGCCGTTA 41276
|| ||||| | |||
Sbjct 3725540 CATTTAGAGGCATTA 3725554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397455980624020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |