Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 196 4e-45 seq1 118 8e-22 >seq2 Length=4539804 Score = 196 bits (216), Expect = 4e-45 Identities = 566/863 (66%), Gaps = 15/863 (2%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| ||||||||||| | ||||| || || |||||| | ||||| || || | || Sbjct 3721980 TTTGTTTTGTTTCCAATTAAGTATCACGAAATTTGGCAATTCTACAAGAAGGCTGAAGCA 3722039 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATT-GGATTGCA-- 43816 || |||||||| || || ||| ||||| | | |||||||| | ||| |||| || Sbjct 3722040 TCTTTTTGGACTGCTGAGGAAATTGATCTTTCGAAAGACTTGGTTGATTGGGATAACAAG 3722099 Query 43817 TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGAC 43876 ||||| | | ||| | ||||| || || | || | ||| |||||| || Sbjct 3722100 TTAAATGCTGATGAACGTTACTTTATTTCCACTGTACTCGCCTATTTCGCTGCGTCAGAT 3722159 Query 43877 GGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC-AAGAAGTTCAATTACCAGAAGC 43935 || || || ||||| ||| | | | |||| || |||||||| | || ||||| Sbjct 3722160 GGTATTGTTAATGAGAATCT-TCTCGAGCGTTTCAGCTCTGAAGTTCAGATCCCTGAAGC 3722218 Query 43936 ACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCT 43995 || ||| ||||||| || |||||| || ||||||||||| || || | ||| || Sbjct 3722219 TCGTTGTGTTTATGGTTTCCAAATTATGATTGAAAATATTCACTCTGAGACCTACTCACT 3722278 Query 43996 TCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA 44055 | || | ||||| ||||| || | || || || || || |||| || Sbjct 3722279 TTTGCTTGATACATACATTCGTGAACCTAAGGAAAAACAGCGTCATTTCGATGCTATTTT 3722338 Query 44056 AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA 44115 |||| | | | ||||| ||||| | ||||| ||| ||||| ||| | || Sbjct 3722339 AACAATGGGTTCTATTAAGGCCAAAGCCAAGTGGGCTCTTCGTTGGATTAATGATGAAGA 3722398 Query 44116 TT---CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 || | | || | || | || || ||||| | ||| ||||| || |||||||| || Sbjct 3722399 TTCCACCTATGCAATTCGTTTGGTTGCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTGG 3722458 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 ||||||||| | || |||||| | |||||||| || | |||||||| | || ||||| Sbjct 3722459 ATCGTTTGCCTCTATTTTTTGGCTTAAGAAACGTGGACTTATGCCTGGTCTTACTTTTTC 3722518 Query 44233 AAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGG 44292 ||||| || || |||||||||| || | || ||| ||||| || ||| | || | Sbjct 3722519 CAATGAATTGATTTGTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTTTGATGTTTAG 3722578 Query 44293 --ATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCA 44350 || | || | | || || | | ||| || || ||| |||| || || Sbjct 3722579 TCATTTGAAGCACA-GACCAGGC----CGCAAGGTTGTTGAAGCCATTATTGTTGAAGCT 3722633 Query 44351 GTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT 44410 || | || || |||||| | || || | || || | | | | || |||||| Sbjct 3722634 GTTGATATTGAGAAAGAATACTTCACGGACGCTCTTCCCGTTAGTCTGCTTGGTATGAAT 3722693 Query 44411 GAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGT 44470 | ||||||| || |||||||||| |||| |||||||| | | | |||| Sbjct 3722694 AAGGATTTGATGTGTCAGTATATTGAATTTGTTGCTGATCGTTTGTTGGTTGCTTTGGGC 3722753 Query 44471 TGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAA 44530 || || |||||| ||| || || || ||||| ||||| ||||| || || | | Sbjct 3722754 AATGACAAGTACTATAACGTAACCAATCCTTTCGATTTCATGGAGAATATCTCTTTAGCA 3722813 Query 44531 GGCAAAACAAACTTTTTTGAAAA 44553 || |||||||| || |||||||| Sbjct 3722814 GGAAAAACAAATTTCTTTGAAAA 3722836 >seq1 Length=5579133 Score = 118 bits (130), Expect = 8e-22 Identities = 448/692 (65%), Gaps = 22/692 (3%) Strand=Plus/Minus Query 19234 GACATGCAAATTGGAGGA-TTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGT 19292 |||||| ||||| || |||| | | ||||| || || || ||| ||||||||| Sbjct 4720315 GACATGGGCATTGGTGGTCTTGACTCA-GAGTTCAGTGCTATTTTCCGTCGAGCATTTGC 4720257 Query 19293 GTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACT 19352 || ||| | ||| || | | | || || | |||| ||| |||||| || | Sbjct 4720256 CTCTCGTCTCTTTCCTCCTGGCATGGTTGAAAAGCTGGGTATTAATCATGTTAAGGGTAT 4720197 Query 19353 TTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATT 19412 | | | ||||| || || ||| ||| || ||||||||||| || || || ||||| | Sbjct 4720196 TCTCTTATATGGCCCTCCAGGTACTGGTAAGACATTAATTGCTCGACAAATTGGTAAAAT 4720137 Query 19413 ACTTACAAAACAACCT---CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGT 19469 || ||| | | || ||||| || |||||||||||||| |||| ||||| || Sbjct 4720136 GCT---AAATGCCCGTGAACCGAAAATCGTTAATGGTCCTGAAATTCTAAACAAATACGT 4720080 Query 19470 AGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAA---GAAGAACAAAA 19526 |||||| |||||||| || || || || || || |||||| || | | | Sbjct 4720079 CGGTCAAAGTGAAGAAAACGTTCGTAAATTATTCGCCGATGCTGAACGTGAGTATCGCGA 4720020 Query 19527 ACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTG 19586 || || | | | | |||| || ||||| || | |||||||| || || || || Sbjct 4720019 TCGCGGAGAG-GAATCGGGTCTT--CATATTATTATCTTCGATGAATTAGATGCCATATG 4719963 Query 19587 TAAGCAAAGAG---GTTCTGGTGTAAAT---GGAGTACATGACACTGTTGTCAATCAACT 19640 ||| | |||| ||||||||| || || || || || || ||||| || Sbjct 4719962 TAAAAAGAGAGGAAGTTCTGGTGGTGATACAGGTGTTGGCGATCAGGTCGTTAATCAGCT 4719903 Query 19641 CCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 || | || | || || ||| | |||||||||||||| | |||||||| |||||||| Sbjct 4719902 TTTGGCTAAGATGGATGGCGTTGATCAACTGAATAATATCCTTGTTATTGGTATGACTAA 4719843 Query 19701 TAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGA 19760 ||| || | || || || | || || || ||||| | || | | || || Sbjct 4719842 CAGAAAAGACATGATCGATGAAGCTCTTTTGCGTCCAGGTCGTCTTGAGGTTCATATGGA 4719783 Query 19761 AA-TTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCA 19819 || || |||| || |||||| || ||| || | ||| | || || ||||| || | Sbjct 4719782 AATTTCACTT-CCAGATGAACACGGCCGTTTGCAGATTCTGAAAATCCATACGTCCCGTA 4719724 Query 19820 TGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCA 19879 || |||| ||||| | | ||||| || | ||||| | ||| | ||| | Sbjct 4719723 TGGCTTCAAATGGTATTTTAGAGAATGATGTTGACATGGAAGAGCTAGCATCTCTTACTA 4719664 Query 19880 AAAACTATAGCGGCGCAGAACTTGAGGGATTA 19911 |||||| | || || ||| ||| |||||| Sbjct 4719663 AAAACTTTTCTGGTGCTGAAATTGCTGGATTA 4719632 Score = 105 bits (116), Expect = 5e-18 Identities = 284/435 (65%), Gaps = 27/435 (6%) Strand=Plus/Plus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925 ||||| || |||||| | ||||| ||||| | | ||||||| ||||| |||||| | Sbjct 3725123 GGTGACCTCGGTCCTATATATGGTTTTCAATGGAGACATTTCGGAGCGCAATATGTTGAT 3725182 Query 40926 ATGTACTCTGATTATACCAATAAAGGAATGGATCAATT---ACAGTGCGTTATAGATACG 40982 | |||| ||||||||||||||| ||||||| | ||| |||||| ||| Sbjct 3725183 TGCGATACTGACTATACCAATAAAGGAGTGGATCAGCTGGCTCAG---GTTATATCTACC 3725239 Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042 | |||| | || || ||| |||||||| | | || ||||||||| | | Sbjct 3725240 CTCAAATTAAACCCTTATGACCGTCGTATAATTCTTTCAGCTTGGAACCCATTAGCTATT 3725299 Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGT---------TTGC 41093 | | ||||| || |||||||| ||| | || || |||||||| || |||| Sbjct 3725300 CCTGAAATGGCTTTACCACCTTGCCATATATTTTGCCAGTTTTATGTCAGTGAGCCTTGC 3725359 Query 41094 AA---TGGTG---------AACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGA 41141 || ||| | |||| || || ||||||| | || | |||||||| Sbjct 3725360 AAGCCTGGGGGAAAGCCCCAACTTTCTAGTATGATGTATCAGCGCTCTGCCGACATGGGG 3725419 Query 41142 CTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTT 41201 || || || || |||||||| || |||| |||| | || ||||||| || ||| | Sbjct 3725420 CTTGGAGTTCCTTTTAACATTGCTTCTTATTCTCTCTTAACACATATGATAGCTCACATG 3725479 Query 41202 ACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAAT 41261 | | || ||| |||||||||||| | || ||| | ||||| |||| | || Sbjct 3725480 TGCGGCTATGAAGCTGCCGAATTTGTTCACGTAATGGGTGATTGTCATATATACAATGAT 3725539 Query 41262 CACATAGAGCCGTTA 41276 || ||||| | ||| Sbjct 3725540 CATTTAGAGGCATTA 3725554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455980624020