Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 105 6e-18 >seq1 Length=5579133 Score = 105 bits (116), Expect = 6e-18 Identities = 237/353 (67%), Gaps = 5/353 (1%) Strand=Plus/Minus Query 131637 CGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTC 131696 |||| ||||||| || | ||||||||| || || | ||| || || || |||| || | Sbjct 4228333 CGTTACGTTCAACACGTTGCATAAACAAGTCAGGAATCCACAAGGCATAGAACATTTCGC 4228274 Query 131697 TAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATT-TAAAAAGTCCAAAATGTCC 131755 || || || || |||| | | ||| || || ||||||||||| || || Sbjct 4228273 GTGCGCGGAAATCCTC-GTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCG 4228215 Query 131756 GCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTA 131812 |||||||| || |||||||| |||| | || || ||| ||||| ||||| | | Sbjct 4228214 GCATGCCAAGGCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCA 4228155 Query 131813 ACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCA 131872 |||| |||| | |||||||||| || || | |||||| | | ||||||| | ||| Sbjct 4228154 ACATAACGAGCTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCA 4228095 Query 131873 TTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCT 131932 || || | ||| || || | ||||| || ||||||| || | |||||||| Sbjct 4228094 TTAGTTCCAGCAATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCG 4228035 Query 131933 CCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTC 131985 || || || ||||| | || || | | || |||| ||||| ||||| Sbjct 4228034 CCAGCGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTC 4227982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934379284448