Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 6e-13 >seq2 Length=4539804 Score = 89.7 bits (98), Expect = 6e-13 Identities = 232/347 (67%), Gaps = 10/347 (3%) Strand=Plus/Plus Query 182519 ACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCG 182578 ||| || || || || ||||||| ||| ||||||||||||||| | | ||||||| || Sbjct 1978935 ACCTTTAATATGTGATCCATCATGATCTTGATCTGTCATAATCATTAAATGACCATAACG 1978994 Query 182579 AAGTTCAGAAACATCTTGGT---AGTCTTTTCCTTGTTGAAGACCAAGGATCTTCTTGAG 182635 ||| | ||||| ||| ||| |||| | |||| || | ||| ||||||| Sbjct 1978995 AAGACCTTTCACATC--GGTATAAGTTTTTTTATGAGTGAA-TCCCATGATTTTCTTGAT 1979051 Query 182636 ATCATTGAACTCCTGGTTTGATGTAAGCTGTGCCA--CCGAAGCGTCCCGAACATTCTTA 182693 | | ||||| | || | | || || | | || | ||||| ||||| |||||| Sbjct 1979052 AGC-TTGAATTTCT-TTGTTATTTAGGATTTGGGAATGAGAAGCCTCCCGTACATTCAGT 1979109 Query 182694 CATTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCA 182753 ||| || | | || || || || || | || | |||||| ||| |||||||| | Sbjct 1979110 AGTTTTCCTCTTAACGGAAAAACTCCATAATAGTCTCTACCAACAACACTGAGACCCGAA 1979169 Query 182754 ACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGT 182813 || || | | ||| || ||||| ||||| |||| || || |||||| |||| | Sbjct 1979170 ACAGCTAAAGATTTAGCAGAATCTCCCTCAGTGAGGATAAGGACACACTTATGGGATTCT 1979229 Query 182814 GCCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACCGGTAAT 182860 |||||||| || || ||||| || | |||| | ||| || || Sbjct 1979230 TTGGTACCCGCTTTATTTGCGTCTTCGAGTTTGGTTAAACCCGTTAT 1979276 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| ||||||||||| || |||| | |||||| || || ||||| Sbjct 3722564 GGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACC 3722505 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| || || || ||||| | |||| |||||| | || || || || |||||||| Sbjct 3722504 AGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGAT 3722445 Query 122778 ACCCTCCACACACGCAAACGCAA 122800 ||| || ||| ||||| |||| Sbjct 3722444 ACCTTCTACAGCAGCAAAGGCAA 3722422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031968598400