Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 221 1e-52 >seq1 Length=5579133 Score = 221 bits (244), Expect = 1e-52 Identities = 1104/1730 (64%), Gaps = 39/1730 (2%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || || |||||||| || ||||| || |||| ||||||| |||| | ||||| | Sbjct 4229513 CGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTAGTA 4229454 Query 117897 AACTTGGAGAGGGTTGGA-CTTTCCA-TGAAGAGGTTCATACTTTGGGATTGATCGATGA 117954 | || | || ||| | ||| | |||| ||||| ||||||||||||||| |||| Sbjct 4229453 ATTTTTCCGTAGGAAGGATCCTTCAAGTGAAT--GTTCAAACTTTGGGATTGATCAATGA 4229396 Query 117955 AGCGTCCCCGATCCGCCGCCATA-TCAATCACATCCTTCATCTTGATTTCCCACACAGTC 118013 | | || || || || || ||| ||||| ||| ||| | || ||||| || || Sbjct 4229395 ATGGGCCACGGTCGGCAGC-ATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337 Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073 |||| || | ||||| || | || || || || ||||||||||||| | | Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGC 4229277 Query 118074 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | || | | |||||| |||| ||| | | || || |||||||| || Sbjct 4229276 ATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAAC 4229217 Query 118134 AG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 118191 || ||| |||||||| || ||||| | || || | | || || || | Sbjct 4229216 AGCCATGG--ATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAG 4229159 Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251 || ||||||||||| ||||||||| ||| | |||||| | ||| || || || |||| Sbjct 4229158 AAGTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCA 4229099 Query 118252 TGGGTGCCA-TGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 | ||||| | | | || | ||||| | || | || ||| |||||| | || Sbjct 4229098 TTGGTGCTACTAACAAAGAA-TTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCG 4229040 Query 118311 TCCCAGTCGTAGTTGAGCTTTGTC-TCCCCCTGCCACATATCAAACTGGAGGATACCTTG 118369 |||| || | || | || | | | |||||| ||| |||| | ||||| || Sbjct 4229039 GCCCAATCCCAAA-GATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACCCTG 4228981 Query 118370 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT 118429 ||| || || ||||| ||| | ||||||||| ||||| |||| || | ||| | Sbjct 4228980 GGATGCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGA 4228921 Query 118430 CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 118489 ||||| ||||||||||| || |||||||| || || | || | |||||| | Sbjct 4228920 GGCCTCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTGGCACC 4228861 Query 118490 GTCGGAATCAAACGCGAGTCGGC-ACAAAATAAATACATCCGCGAGACCTTGGACACCGA 118548 | || || || | | || | || ||| |||| || |||||||| ||||| | Sbjct 4228860 TGCAGATTCGAATGGTAAACGAAGAGCGAAGAAAG-CATCGGCAAGACCTTGAACACCCA 4228802 Query 118549 GGCCAATTGGGCGATGTCTCATATTAGACTTC--CGAGCGGTCTCCACGGGATAAAAATT 118606 |||| || ||||| | |||||| || | ||||| || |||||| | || Sbjct 4228801 AACCAACGGGACGATGGCGCATATTG--CTACGGCGAGCTTCAGGAACAGGATAATAGTT 4228744 Query 118607 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 118666 ||||||| | | || || || || || ||||| || || |||||||||| Sbjct 4228743 AACGTCGATAATCTTGTTGAGGTTACGAGTAACGACCTTCACGACATCGTGAAGCTTTTG 4228684 Query 118667 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 118726 | ||| | | | |||| || | | | | || | || | ||| || || || Sbjct 4228683 GAAATTGTACTTTCC-GTCT-----TTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTT 4228630 Query 118727 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACT 118786 ||| |||| || || | || ||| || | ||| || || |||| |||||| | Sbjct 4228629 ACAAACAGCAACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCA 4228570 Query 118787 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCAT 118846 ||| || || | ||||| ||||| ||||| ||| || | |||||| || | ||| Sbjct 4228569 GCGAATAGTACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACAT 4228510 Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGG 118906 | | || | || || || ||| || | ||||| || | ||| || | ||| || Sbjct 4228509 GAAAGGATTACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGG 4228450 Query 118907 CACAGTGGCGTTGGCT-CGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTT 118965 | | || | | || ||| | ||| |||||| ||||||||| ||||||| | Sbjct 4228449 TAATGAA-CGACGACCACGGTTCTCCTTCTCATACTTTTCGTAGAGGGCAACAAACTCGT 4228391 Query 118966 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 119025 ||||| | |||| | ||||| |||| || |||||||||| | |||||| | | Sbjct 4228390 CACCCCAAACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTG--CTC 4228333 Query 119026 CCTCC--TCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 119083 | | ||||| || | ||| || | ||| || ||||| | || |||| | || || Sbjct 4228332 GTTACGTTCAACACGTTGCATAAACAAGTCAGGAATCCACAAGGCATAGAACATTTCGCG 4228273 Query 119084 ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 119143 ||| || || | || ||| | || | || ||||||||||| | ||| || Sbjct 4228272 TGCGCGGAAATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGC 4228213 Query 119144 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTAC 119200 ||||| || |||| || | || | | || ||| | ||| | |||| || Sbjct 4228212 ATGCCAAGGCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAAC 4228153 Query 119201 ATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATT 119260 ||| | || ||| ||| | ||||||| ||| || | || || | ||| ||||| Sbjct 4228152 ATAACGAGCTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATT 4228093 Query 119261 TGTCCCCCGAATA--CGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCC 119318 || || |||| ||| || ||| |||| | | ||| || | ||||||||||| Sbjct 4228092 AGTTCCAGCAATATACGA-ACCGGTTG-CTCTAATGTTGTGAATATTAATACCAATACCG 4228035 Query 119319 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 119378 || || ||| ||||| || ||| | |||| || ||||||| || || || ||| Sbjct 4228034 CCAGCGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAG 4227975 Query 119379 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTG 119438 || | || | | | |||||| || || | ||| || | || ||||| || ||| Sbjct 4227974 TCGTCTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTG 4227915 Query 119439 AAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAG 119498 || |||||||||| || ||| | || | ||| |||||| | ||| || || | Sbjct 4227914 AAAAGAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATA 4227855 Query 119499 ACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 | || |||||| || ||||| ||||| | | ||| ||||||| ||| Sbjct 4227854 GCAGCTTCAATGTCCTCACCGTGGATACCAACGGCGACACGCATAATCAT 4227805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435169078240